Gene: Os10g0536100
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os10g0536100
- Transcript Identifier Os10t0536100-01
- Gene Type Coding gene
- Location chr10 : 20863580-20873324 : positive
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Os10t0536100-01
- MSU-ID LOC_Os10g39130.1
- MSU-ID LOC_Os10g39130.2
- symbol OsMADS56
- symbol MADS56
- name MADS-box transcription factor 56
- name MADS box gene56
- uniprot P0C5B2
Descriptions
- Description MIKC-type MADS-box protein, Long day (LD)-specific negative regulator of flowering
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010082 | ISO | PLAZA Integrative Orthology | regulation of root meristem growth | AT4G11880 |
| GO:0010150 | ISO | PLAZA Integrative Orthology | leaf senescence | AT5G62165 |
| GO:0080187 | ISO | PLAZA Integrative Orthology | floral organ senescence | AT5G62165 |
| GO:0009911 | ISO | PLAZA Integrative Orthology | positive regulation of flower development | AT2G45660 |
| GO:0009838 | ISO | PLAZA Integrative Orthology | abscission | AT5G62165 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT2G45660 |
| GO:0009739 | ISO | PLAZA Integrative Orthology | response to gibberellin | AT2G45660 |
| GO:0010076 | ISO | PLAZA Integrative Orthology | maintenance of floral meristem identity | AT4G11880 |
| GO:0009909 | ISO | PLAZA Integrative Orthology | regulation of flower development | AT5G51860 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT2G45660 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT2G45660 |
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT4G22950 |
| GO:2000012 | ISO | PLAZA Integrative Orthology | regulation of auxin polar transport | AT4G11880 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT4G11880 |
| GO:0010048 | ISO | PLAZA Integrative Orthology | vernalization response | AT4G22950 |
| GO:0006357 | IBA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | GOA Database | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0010077 | ISO | PLAZA Integrative Orthology | maintenance of inflorescence meristem identity | AT2G45660 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G11880 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT4G11880 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046983 | IEA | GOA Database | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000977 | IEA | GOA Database | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000981 | IBA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0000978 | IBA | GOA Database | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT4G11880 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |