Gene: Os03g0738400

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os03g0738400
  • Transcript Identifier Os03t0738400-01
  • Gene Type Coding gene
  • Location chr03 : 30299668-30303629 : positive

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os03t0738400-01
  • MSU-ID LOC_Os03g52840.3
  • MSU-ID LOC_Os03g52840.2
  • MSU-ID LOC_Os03g52840.1
  • symbol OsSHM1
  • symbol OsSHMT
  • symbol OsCDM1
  • symbol OsSHMT1
  • name chlorophyll-deficient mutant 1
  • name serine hydroxymethyltransferase 1
  • uniprot Q10D68

Descriptions

  • Description Serine hydroxymethyltransferase, Regulatory function in photorespiration, Regulation of chilling tolerance
  • Description Similar to Serine hydroxymethyltransferase.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
IEA
GOA Databaseresponse to cold
GO:0009416
IEA
GOA Databaseresponse to light stimulus
GO:0009853
IEA
GOA Databasephotorespiration
GO:0006544
IEA
GOA Databaseglycine metabolic process
GO:0006563
IEA
GOA DatabaseL-serine metabolic process
GO:0007623
IEA
GOA Databasecircadian rhythm
GO:0019264
IBA
IEA
GOA Databaseglycine biosynthetic process from serine
GO:0019264
IEA
InterProglycine biosynthetic process from serine
GO:0035999
IEA
GOA Databasetetrahydrofolate interconversion
GO:0035999
IEA
InterProtetrahydrofolate interconversion
GO:0019464
ISO
PLAZA Integrative Orthologyglycine decarboxylation via glycine cleavage system AT4G37930
GO:0009626
ISO
PLAZA Integrative Orthologyplant-type hypersensitive response AT4G37930
GO:0046655
IBA
GOA Databasefolic acid metabolic process
GO:0006730
IBA
IEA
GOA Databaseone-carbon metabolic process
GO:0032259
IEA
GOA Databasemethylation
GO:0046653
IBA
GOA Databasetetrahydrofolate metabolic process
GO:0006565
IBA
GOA DatabaseL-serine catabolic process
GO:0046686
IEA
GOA Databaseresponse to cadmium ion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0008266
IEA
GOA Databasepoly(U) RNA binding
GO:0004372
IBA
IEA
GOA Databaseglycine hydroxymethyltransferase activity
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity
GO:0030170
IBA
IEA
GOA Databasepyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G37930
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0070905
IBA
GOA Databaseserine binding
GO:0050897
IBA
GOA Databasecobalt ion binding
GO:0008270
IBA
GOA Databasezinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009534
IEA
GOA Databasechloroplast thylakoid
GO:0022626
IEA
GOA Databasecytosolic ribosome
GO:0048046
IEA
GOA Databaseapoplast
GO:0005829
IEA
GOA Databasecytosol
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005634
IEA
GOA Databasenucleus
GO:0010319
IEA
GOA Databasestromule
GO:0005747
ISO
PLAZA Integrative Orthologymitochondrial respiratory chain complex I AT5G26780
GO:0005737
IBA
GOA Databasecytoplasm
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0005886
IEA
GOA Databaseplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001085 Serine hydroxymethyltransferase
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR039429 Serine hydroxymethyltransferase-like domain
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)