Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1917.1 978 100.0
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1757.7 976 92.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1735.3 980 90.8
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1721.1 978 90.3
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1661.0 921 93.4
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1654.8 976 85.8
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1651.3 976 85.6
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1650.6 977 86.5
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1624.8 932 85.9
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1598.9 945 86.0
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1586.6 974 83.5
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1582.4 974 82.0
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1578.1 977 82.0
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1572.4 978 82.2
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1570.1 977 82.1
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1569.3 973 82.5
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1567.0 929 83.0
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1565.4 974 80.8
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1562.7 930 81.7
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1562.0 976 80.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 976 79.7
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1555.8 929 81.9
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1548.1 973 80.6
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 975 78.9
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1544.6 936 83.5
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1538.1 973 77.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1536.5 976 79.8
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1535.4 975 79.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1534.6 975 79.5
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1534.6 978 79.8
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1534.6 975 78.5
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1532.7 979 79.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1532.7 977 79.7
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1530.0 977 79.5
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1528.1 975 79.8
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1526.5 1001 78.2
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1526.5 974 78.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 985 79.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1524.6 973 78.8
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 973 79.8
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 978 79.0
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1520.4 973 78.8
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 972 77.8
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 977 79.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1519.6 981 80.1
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1518.4 975 78.8
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1518.4 996 78.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 980 78.8
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 975 78.4
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1517.7 929 80.5
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1515.0 975 78.6
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 979 77.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 974 79.4
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 975 78.1
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 977 77.9
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 975 78.1
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 975 78.4
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1511.1 975 78.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1510.0 977 78.5
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1509.2 982 78.4
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1509.2 975 77.6
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 977 77.7
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 978 77.7
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1507.7 973 77.7
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1503.0 976 77.7
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1503.0 974 77.8
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 974 78.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 980 78.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 977 77.2
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1493.0 975 77.5
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1493.0 1200 67.2
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1491.1 983 78.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 937 77.1
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 977 78.0
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1478.4 973 77.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1475.7 937 79.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 982 78.2
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1471.8 987 76.3
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1465.7 976 75.7
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1458.0 971 76.5
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1456.8 975 75.8
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1453.0 973 76.6
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1445.3 985 75.1
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 979 74.6
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1426.4 997 74.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1426.4 1003 72.1
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 983 75.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1424.1 1002 74.0
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1424.1 1002 74.0
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1422.1 979 73.7
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1420.2 846 81.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 860 80.8
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 966 73.6
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 989 73.2
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 987 73.9
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1412.9 973 72.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1400.2 995 73.3
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1400.2 989 72.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1398.3 998 72.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1397.1 977 73.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1392.1 977 72.7
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1392.1 980 70.1
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1384.0 971 71.3
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1379.4 971 69.8
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1364.0 940 72.6
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1362.4 985 71.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1332.0 922 72.3
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1330.1 927 69.7
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1306.6 974 67.6
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1293.1 801 80.6
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1284.6 803 79.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1242.6 743 82.5
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1216.4 940 63.6
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1196.0 800 71.6
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1189.5 992 64.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1163.3 704 81.8
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1134.0 971 62.1
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1118.2 995 57.2
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1115.1 1005 58.9
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1105.9 722 78.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1104.4 978 58.5
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.7e-302 1040.4 666 78.2
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.3e-276 956.8 806 58.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 8.2e-276 954.1 673 73.7
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.4e-275 952.6 592 80.2
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-247 860.5 578 75.1
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.2e-229 800.8 540 74.4
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.3e-220 770.8 615 66.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.2e-211 739.6 441 85.0
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.6e-207 727.2 517 70.8
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.6e-186 656.0 408 82.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 6.4e-180 635.6 403 78.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.9e-177 626.3 1054 37.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.4e-145 521.5 415 61.2
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.2e-140 504.2 841 37.7
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.1e-139 501.9 430 59.1
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.6e-117 428.3 252 80.2
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.7e-117 427.6 223 90.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 8.8e-113 412.5 479 50.7
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 9.5e-107 392.5 1069 27.9
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.7e-100 371.7 854 31.3
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.1e-94 350.5 296 60.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.6e-90 338.6 365 45.8
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 5.8e-88 330.1 266 63.2
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.9e-83 315.1 270 59.6
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.9e-83 315.1 270 59.6
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 7.8e-77 293.1 303 55.8
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.3e-60 239.2 148 73.6
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.7e-47 195.7 191 48.2
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 8.4e-47 193.4 149 59.7
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 8.4e-47 193.4 149 59.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.8e-44 185.7 118 72.9
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.1e-44 184.1 102 85.3
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 3.3e-43 181.4 139 59.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.7e-43 180.6 240 47.9
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.1e-41 174.5 170 52.9
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.3e-39 169.5 141 53.2
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.3e-35 154.8 76 93.4
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 5.7e-35 154.1 111 69.4
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 9.7e-35 153.3 76 92.1
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-34 151.8 75 93.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-33 149.4 76 89.5
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 4.1e-33 147.9 116 67.2
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.0e-32 145.6 78 85.9
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.0e-32 145.6 119 62.2
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.6e-32 145.2 74 90.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 2.9e-31 141.7 88 78.4
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 6.5e-31 140.6 140 56.4
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.0e-28 131.7 92 71.7
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.9e-28 131.3 78 80.8
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 4.8e-26 124.4 142 49.3
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 4.1e-25 121.3 601 22.3
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.1e-25 121.3 65 87.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 5.3e-25 120.9 112 52.7
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.0e-23 116.7 126 48.4
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.7e-21 108.6 130 48.5
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.0e-15 90.1 82 56.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.7e-13 82.0 96 47.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 2.6e-11 75.5 80 53.8
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 9.1e-09 67.0 39 66.7
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 1.7e-07 62.8 80 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 3.8e-07 61.6 48 56.2
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 5.0e-07 61.2 48 56.2


User provided reference genes

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