Gene: Lsat_1_v5_gn_8_33040
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_8_33040
- Transcript Identifier Lsat_1_v5_gn_8_33040.1
- Gene Type Coding gene
- Location Lsat_1_v8_lg_8 : 42822823-42825852 : negative
Gene Family Information
- ID HOM05D001696
- #Genes/#Species 382/99
- Phylogenetic origin
- ID ORTHO05D001746
- #Genes/#Species 360/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lsat_1_v5_gn_8_33040.v5
- pacid 38950605
Descriptions
- Description K12617 - DNA topoisomerase 2-associated protein PAT1 (PATL1, PAT1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000290 | IEA | InterPro | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0019827 | ISO | PLAZA Integrative Orthology | stem cell population maintenance | AT3G22270 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G22270 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G14990 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G22270 |
| GO:0005783 | ISO | PLAZA Integrative Orthology | endoplasmic reticulum | AT3G22270 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039900 | Pat1-like |
| Mapman id | Description |
|---|---|
| 16.4.2.5 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decay factor (PAT1) |