Gene: Lsat_1_v5_gn_8_155641

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_8_155641
  • Transcript Identifier Lsat_1_v5_gn_8_155641.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_8 : 270082165-270082998 : positive

Gene Family Information

  • ID HOM05D000479
  • #Genes/#Species 1104/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_8_155641.v5
  • pacid 38955778

Descriptions

  • Description K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002213
ISO
PLAZA Integrative Orthologydefense response to insect AT3G44260
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT3G44260
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT3G44260
GO:0000289
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA poly(A) tail shortening AT3G44260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0004535
IEA
InterPropoly(A)-specific ribonuclease activity
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT3G44260
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G44260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030014
IEA
InterProCCR4-NOT complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
IPR039637 CCR4-NOT transcription complex subunit 7/8/Pop2
IPR006941 Ribonuclease CAF1
Mapman id Description
16.4.2.1.2.2 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1