Gene: Lsat_1_v5_gn_1_32080

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_1_32080
  • Transcript Identifier Lsat_1_v5_gn_1_32080.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_1 : 36906800-36909115 : negative

Gene Family Information

  • ID HOM05D000537
  • #Genes/#Species 1018/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_1_32080.v5
  • pacid 38945605

Descriptions

  • Description PF03468//PF03469//PF03470 - XS domain (XS) // XH domain (XH) // XS zinc finger domain (zf-XS)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031047
IEA
InterProgene silencing by RNA
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT1G80790
GO:0010569
ISO
PLAZA Integrative Orthologyregulation of double-strand break repair via homologous recombination AT1G15910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT1G15910
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G15910
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G15910
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT1G15910
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G15910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G15910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038588 XS domain superfamily
IPR005380 XS domain
IPR005381 Zinc finger-XS domain
IPR005379 Uncharacterised domain XH
Mapman id Description
12.5.1.4 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.regulatory protein (IDN/IDP)