Gene: AT1G15910
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G15910
- Transcript Identifier AT1G15910.1
- Gene Type Coding gene
- Location Chr1 : 5465951-5468723 : positive
Gene Family Information
- ID HOM05D000537
- #Genes/#Species 1018/95
- Phylogenetic origin
- ID ORTHO05D000415
- #Genes/#Species 961/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G15910.1
- symbol FDM1
- Alias IDNL1,INVOLVED IN DE NOVO 2 (IDN2) - LIKE 1,IDP1,IDN2 PARALOG 1
- full_name factor of DNA methylation 1
- uniprot Q9S9P3
Descriptions
- Description XH/XS domain-containing protein
- Computational description XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT4G00380.1); Has 48628 Blast hits to 29972 proteins in 1836 species: Archae - 567; Bacteria - 5701; Metazoa - 24120; Fungi - 3416; Plants - 1878; Viruses - 163; Other Eukaryotes - 12783 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0080188 | IGI | Gene Ontology | gene silencing by RNA-directed DNA methylation | 1 |
| GO:0010569 | IEP | Gene Ontology | regulation of double-strand break repair via homologous recombination | 2 |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0031047 | IEA | InterPro | gene silencing by RNA |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003725 | IDA | Gene Ontology | double-stranded RNA binding | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IDA | Gene Ontology | DNA binding | 3 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IDA | Gene Ontology | RNA binding | 3 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0043621 | IPI | Gene Ontology | protein self-association | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.5.1.4 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.regulatory protein (IDN/IDP) |