Gene: HanXRQChr11g0338831

General Information

Structural Information

  • Species Helianthus annuus
  • Gene Identifier HanXRQChr11g0338831
  • Transcript Identifier HanXRQChr11g0338831.r1.2.494
  • Gene Type Coding gene
  • Location HanXRQChr11 : 97722606-97724515 : positive

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id HanXRQChr11g0338831.r1.2
  • pacid 40341716

Descriptions

  • Description Putative polyadenylate binding protein, human types 1, 2, 3, 4; Nucleotide-binding alpha-beta plait domain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0060211
ISO
PLAZA Integrative Orthologyregulation of nuclear-transcribed mRNA poly(A) tail shortening AT4G34110
GO:1900151
ISO
PLAZA Integrative Orthologyregulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay AT4G34110
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G49760
GO:0006446
ISO
PLAZA Integrative Orthologyregulation of translational initiation AT4G34110

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G49760
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G49760

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G49760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036053 PABC (PABP) domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR000504 RNA recognition motif domain
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
Mapman id Description
17.4.2.5 Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP)