Gene: HPP92_010206
General Information
Structural Information
- Species Vanilla planifolia
- Gene Identifier HPP92_010206
- Transcript Identifier Vpl05Ag10206.1
- Gene Type Coding gene
- Location CM028154.1 : 2322551-2360810 : negative
Gene Family Information
- ID HOM05D002349
- #Genes/#Species 289/96
- Phylogenetic origin
- ID ORTHO05D002464
- #Genes/#Species 285/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Vpl05Ag10206.1
- pid KAG0479348.1
Descriptions
- Description E3 ubiquitin-protein ligase RING1 ***
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048364 | ISO | PLAZA Integrative Orthology | root development | AT5G44280 |
| GO:0010492 | ISO | PLAZA Integrative Orthology | maintenance of shoot apical meristem identity | AT5G44280 |
| GO:0010077 | ISO | PLAZA Integrative Orthology | maintenance of inflorescence meristem identity | AT5G44280 |
| GO:0045814 | ISO | PLAZA Integrative Orthology | negative regulation of gene expression, epigenetic | AT5G44280 |
| GO:0010076 | ISO | PLAZA Integrative Orthology | maintenance of floral meristem identity | AT5G44280 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT5G44280 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT5G44280 |
| GO:0001709 | ISO | PLAZA Integrative Orthology | cell fate determination | AT5G44280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008962 | IEA | InterPro | phosphatidylglycerophosphatase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G44280 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G44280 |
| GO:0035102 | ISO | PLAZA Integrative Orthology | PRC1 complex | AT5G44280 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR036412 | HAD-like superfamily |
| IPR044592 | Putative E3 ubiquitin-protein ligase RING1a/b |
| IPR010021 | Phosphatidylglycerophosphate phosphatase |
| IPR001841 | Zinc finger, RING-type |
| IPR027706 | PGP phosphatase, mitochondrial/chloroplastic |
| IPR023214 | HAD superfamily |
| IPR006549 | HAD-superfamily hydrolase,subfamily IIIA |
| Mapman id | Description |
|---|---|
| 12.3.6.1.2 | Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.core components.modification writer component RING1 |
| 5.2.7.3 | Lipid metabolism.glycerolipid biosynthesis.phosphatidylglycerol.phosphatidylglycerophosphate phosphatase (PGPP) |