Gene: FAN21G3001
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN21G3001
- Transcript Identifier FAN21G3001.1
- Gene Type Coding gene
- Location Fvb3-2 : 3241972-3247707 : positive
Gene Family Information
- ID HOM05D001939
- #Genes/#Species 340/97
- Phylogenetic origin
- ID ORTHO05D002051
- #Genes/#Species 323/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb3-2-augustus-gene-32.54.v1.0.a1
- pacid 50481977
Descriptions
- Description PF01926//PF05627//PF12763//PF16880 - 50S ribosome-binding GTPase (MMR_HSR1) // Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) // Cytoskeletal-regulatory complex EF hand (EF-hand_4) // N-terminal EH-domain containing protein (EHD_N)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032956 | ISO | PLAZA Integrative Orthology | regulation of actin cytoskeleton organization | AT4G05520 |
| GO:0051260 | ISO | PLAZA Integrative Orthology | protein homooligomerization | AT4G05520 |
| GO:0006897 | ISO | PLAZA Integrative Orthology | endocytosis | AT4G05520 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0005509 | IEA | InterPro | calcium ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G05520 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT4G05520 |
| GO:0043231 | ISO | PLAZA Integrative Orthology | intracellular membrane-bounded organelle | AT4G05520 |
| GO:0016020 | ISO | PLAZA Integrative Orthology | membrane | AT4G05520 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G05520 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040990 | Domain of unknown function DUF5600 |
| IPR000261 | EH domain |
| IPR045063 | Dynamin, N-terminal |
| IPR031692 | EH domain-containing protein, N-terminal |
| IPR002048 | EF-hand domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011992 | EF-hand domain pair |
| IPR008700 | RIN4, pathogenic type III effector avirulence factor Avr cleavage site |
| Mapman id | Description |
|---|---|
| 22.4.4.1 | Vesicle trafficking.endocytic trafficking.endocytic recycling.regulatory protein (EHD) |