Gene: FAN05G0147
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN05G0147
- Transcript Identifier FAN05G0147.1
- Gene Type Coding gene
- Location Fvb6-3 : 7316386-7329858 : positive
Gene Family Information
- ID HOM05D002300
- #Genes/#Species 294/98
- Phylogenetic origin
- ID ORTHO05D002340
- #Genes/#Species 296/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id augustus_masked-Fvb6-3-processed-gene-73.2.v1.0.a1
- pacid 50500049
Descriptions
- Description PF00076//PF01699//PF07744//PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Sodium/calcium exchanger protein (Na_Ca_ex) // SPOC domain (SPOC) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0055085 | IEA | InterPro | transmembrane transport | |
| GO:0006816 | IEA | InterPro | calcium ion transport | |
| GO:0006812 | IEA | InterPro | cation transport | |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT4G12640 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0015369 | IEA | InterPro | calcium:proton antiporter activity | |
| GO:0008324 | IEA | InterPro | cation transmembrane transporter activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016021 | IEA | InterPro | integral component of membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR012921 | Spen paralogue and orthologue SPOC, C-terminal |
| IPR004837 | Sodium/calcium exchanger membrane region |
| IPR000504 | RNA recognition motif domain |
| IPR004798 | Calcium/proton exchanger CAX-like |
| IPR044880 | NCX, central ion-binding domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR004713 | Calcium/proton exchanger |
| Mapman id | Description |
|---|---|
| 24.2.9.1.1 | Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation antiporter (CAX) |