Gene: Duzib114G0644

General Information

Structural Information

  • Species Durio zibethinus
  • Gene Identifier Duzib114G0644
  • Transcript Identifier Duzib114G0644.01
  • Gene Type Coding gene
  • Location NW_019167926.1 : 16120878-16131637 : positive

Gene Family Information

  • ID HOM05D159831
  • #Genes/#Species 1 / 1(orphan gene)
  • Phylogenetic origin
  • ID ORTHO05D455196
  • #Genes/#Species 1 / 1(orphan gene)
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name LOC111310464
  • name XM_022909953.1
  • pid XP_022765688.1
  • id gene-LOC111310464
  • uniprot A0A6P6ALI3

Descriptions

  • product transcription elongation factor SPT6 homolog
  • Description The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 5 codons; deleted 3 bases in 3 codons
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032968
IEA
GOA Databasepositive regulation of transcription elongation from RNA polymerase II promoter
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0006414
IEA
GOA Databasetranslational elongation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003746
IEA
GOA Databasetranslation elongation factor activity
GO:0003676
IEA
GOA Databasenucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017072 Transcription elongation factor Spt6
IPR012337 Ribonuclease H-like superfamily
IPR010994 RuvA domain 2-like
IPR032706 Transcription elongation factor Spt6, helix-hairpin-helix motif
IPR041692 HHH domain 9
IPR028083 Spt6 acidic, N-terminal domain
IPR012340 Nucleic acid-binding, OB-fold
IPR006641 YqgF/RNase H-like domain
IPR035420 Spt6, SH2 domain
IPR037027 YqgF/RNase H-like domain superfamily
IPR023323 Tex-like domain superfamily
IPR036860 SH2 domain superfamily
IPR035019 Spt6, SH2 domain, N terminus
IPR022967 RNA-binding domain, S1
IPR035018 Spt6, SH2 domain, C terminus
IPR023319 Tex-like protein, HTH domain superfamily
IPR028231 Transcription elongation factor Spt6, YqgF domain
IPR042066 Spt6, Death-like domain
Mapman id Description
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6