Gene: Cc00_g10930

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc00_g10930
  • Transcript Identifier Cc00_g10930.1
  • Gene Type Coding gene
  • Location chr0 : 88325969-88331017 : negative

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB F6GZK4
  • UniProtKB Q9SZJ5
  • UniProtKB B9SMX7
  • UniProtKB P49357
  • UniProtKB A9PL06
  • UniProtKB P34899
  • id GSCOCG00001641001

Descriptions

  • Description Serine hydroxymethyltransferase, mitochondrial
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009626
ISO
PLAZA Integrative Orthologyplant-type hypersensitive response AT4G37930
GO:0019464
ISO
PLAZA Integrative Orthologyglycine decarboxylation via glycine cleavage system AT4G37930
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G37930
GO:0006544
ISO
PLAZA Integrative Orthologyglycine metabolic process AT5G26780
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT4G37930
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT4G37930
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT4G37930
GO:0009853
ISO
PLAZA Integrative Orthologyphotorespiration AT4G37930
GO:0006563
ISO
PLAZA Integrative OrthologyL-serine metabolic process AT5G26780
GO:0035999
IEA
InterProtetrahydrofolate interconversion
GO:0019264
IEA
InterProglycine biosynthetic process from serine

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050897
ISO
PLAZA Integrative Orthologycobalt ion binding AT5G26780
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G37930
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G37930
GO:0003824
IEA
InterProcatalytic activity
GO:0008266
ISO
PLAZA Integrative Orthologypoly(U) RNA binding AT4G37930
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding AT5G26780
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G26780
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT4G37930
GO:0010319
ISO
PLAZA Integrative Orthologystromule AT4G37930
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G26780
GO:0005747
ISO
PLAZA Integrative Orthologymitochondrial respiratory chain complex I AT5G26780
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G37930
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G37930
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT4G37930
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT4G37930
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT4G37930

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
IPR001085 Serine hydroxymethyltransferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR039429 Serine hydroxymethyltransferase-like domain
IPR015424 Pyridoxal phosphate-dependent transferase
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)