Gene: Cc00_g09100
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc00_g09100
- Transcript Identifier Cc00_g09100.1
- Gene Type Coding gene
- Location chr0 : 78554946-78566304 : negative
Gene Family Information
- ID HOM05D003169
- #Genes/#Species 215/96
- Phylogenetic origin
- ID ORTHO05D003700
- #Genes/#Species 209/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- UniProtKB B9RYK7
- UniProtKB Q689Z5
- UniProtKB F4IF36
- UniProtKB Q5BJL5
- UniProtKB F6H9S6
- UniProtKB A3KN83
- id GSCOCG00012324001
Descriptions
- Description Putative Protein strawberry notch homolog 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0010286 | ISO | PLAZA Integrative Orthology | heat acclimation | AT1G79350 |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT1G79350 |
| GO:1900036 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to heat | AT1G79350 |
| GO:0016584 | ISO | PLAZA Integrative Orthology | nucleosome positioning | AT1G79350 |
| GO:0006334 | ISO | PLAZA Integrative Orthology | nucleosome assembly | AT1G79350 |
| GO:0040029 | ISO | PLAZA Integrative Orthology | regulation of gene expression, epigenetic | AT1G79350 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031490 | ISO | PLAZA Integrative Orthology | chromatin DNA binding | AT1G79350 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G79350 |
| GO:1990841 | ISO | PLAZA Integrative Orthology | promoter-specific chromatin binding | AT1G79350 |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT1G79350 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G79350 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G79350 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR019787 | Zinc finger, PHD-finger |
| IPR026741 | Protein strawberry notch |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR026937 | Strawberry notch, helicase C domain |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR001965 | Zinc finger, PHD-type |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |