Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 0.0e+00 1391.7 713 100.0
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 0.0e+00 1198.3 692 85.5
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 0.0e+00 1198.3 695 85.6
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1198.3 693 85.7
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 0.0e+00 1197.6 693 85.1
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 0.0e+00 1193.3 725 83.0
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 0.0e+00 1193.3 691 85.1
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1191.0 693 84.6
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 0.0e+00 1188.7 692 84.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 0.0e+00 1185.6 693 85.4
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 0.0e+00 1184.5 690 85.2
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 0.0e+00 1182.5 692 84.2
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 0.0e+00 1179.9 693 84.3
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 0.0e+00 1177.9 746 79.8
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 0.0e+00 1175.2 693 83.1
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 0.0e+00 1174.1 694 83.3
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 0.0e+00 1171.0 693 82.8
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1169.8 693 82.8
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1169.5 693 82.7
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 0.0e+00 1167.5 693 82.8
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 0.0e+00 1167.5 691 83.1
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1164.4 694 83.1
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1164.4 694 83.1
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1161.0 692 82.4
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 0.0e+00 1160.6 693 82.8
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 0.0e+00 1154.0 693 82.3
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 0.0e+00 1152.1 692 81.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 0.0e+00 1150.6 693 82.0
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 0.0e+00 1146.3 694 81.6
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1142.5 693 81.0
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 0.0e+00 1142.1 693 80.8
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1142.1 692 81.4
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 0.0e+00 1140.2 669 84.5
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 0.0e+00 1139.0 708 81.1
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 0.0e+00 1138.6 693 81.8
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1138.3 692 82.5
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 0.0e+00 1137.1 696 80.9
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1132.5 692 81.1
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 0.0e+00 1131.7 692 81.2
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 0.0e+00 1130.9 697 81.3
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1130.2 693 81.0
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 0.0e+00 1130.2 805 73.0
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 0.0e+00 1129.0 691 82.2
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 0.0e+00 1127.5 693 79.9
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1125.5 693 80.4
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1125.2 693 80.4
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 0.0e+00 1124.4 701 80.7
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 0.0e+00 1120.9 693 80.4
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 0.0e+00 1118.6 698 81.4
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1115.1 682 80.8
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1114.8 692 79.5
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 0.0e+00 1113.6 693 79.7
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1112.8 693 80.7
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 0.0e+00 1112.1 692 79.3
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 0.0e+00 1111.7 696 79.9
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1110.1 683 80.4
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 0.0e+00 1109.7 695 80.1
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1108.2 699 78.7
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 0.0e+00 1107.0 696 79.6
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1104.7 695 79.0
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 0.0e+00 1104.0 693 78.8
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 0.0e+00 1102.8 692 78.5
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1101.7 699 78.4
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 0.0e+00 1100.1 693 78.4
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 0.0e+00 1099.7 693 78.2
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 0.0e+00 1099.3 710 78.3
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 0.0e+00 1096.3 693 78.1
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1094.3 701 77.9
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 0.0e+00 1092.4 706 77.3
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 0.0e+00 1086.6 733 75.2
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1086.6 740 74.2
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1085.1 731 74.8
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 0.0e+00 1082.4 721 76.1
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 0.0e+00 1082.0 730 75.1
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 0.0e+00 1078.5 717 75.9
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1075.1 697 77.2
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 1.5e-311 1072.4 697 76.9
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 4.5e-308 1060.8 694 74.9
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 6.5e-307 1057.0 693 77.6
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 7.0e-301 1036.9 629 80.0
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 3.7e-294 1014.6 687 75.7
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 4.1e-293 1011.1 694 72.2
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 7.7e-292 1006.9 714 73.9
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 7.7e-292 1006.9 693 75.0
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 1.2e-289 999.6 766 68.8
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 4.7e-289 997.7 683 72.2
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 2.3e-288 995.3 713 70.1
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 1.8e-285 985.7 692 73.0
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 7.7e-284 980.3 619 79.8
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 5.0e-283 977.6 711 70.6
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 6.8e-280 967.2 694 68.4
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 5.4e-277 957.6 688 69.2
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.1e-274 949.9 793 65.3
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 9.5e-274 946.8 603 78.9
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 2.0e-271 939.1 700 68.1
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 8.3e-270 933.7 682 68.9
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 5.6e-266 921.0 724 67.1
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 1.1e-261 906.7 745 62.6
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 2.1e-260 902.5 554 80.7
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 4.1e-253 878.2 685 67.3
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 4.1e-253 878.2 685 67.3
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 4.6e-252 874.8 697 64.1
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 6.6e-251 870.9 503 83.9
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 4.0e-248 861.7 738 60.6
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 5.4e-245 851.3 693 64.5
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 9.3e-245 850.5 555 76.8
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 2.4e-240 835.9 688 64.1
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 9.6e-234 813.9 693 60.5
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 3.1e-232 808.9 713 61.2
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 4.5e-231 805.1 693 60.0
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 4.3e-226 788.5 711 60.1
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 7.4e-226 787.7 683 62.5
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.0e-222 777.3 900 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 1.3e-217 760.4 699 57.2
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 4.3e-210 735.3 486 74.5
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 2.6e-191 672.9 414 79.2
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 8.0e-188 661.4 625 57.4
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 4.0e-187 659.1 392 82.9
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 9.8e-170 601.3 704 49.7
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 1.1e-168 597.8 733 48.0
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 4.6e-159 565.8 378 71.4
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 1.9e-157 560.5 469 65.0
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 1.5e-154 550.8 356 77.0
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 2.3e-150 537.0 379 69.9
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 6.6e-150 535.4 338 81.1
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 3.4e-146 523.1 381 73.0
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 4.4e-146 522.7 304 85.5
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 7.1e-144 515.4 303 85.8
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 1.6e-143 514.2 496 56.2
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 9.5e-141 505.0 332 75.3
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 3.5e-135 486.5 304 83.2
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.4e-115 421.4 326 66.9
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.5e-114 417.9 262 78.6
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 5.8e-114 416.0 323 66.6
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 9.9e-114 415.2 293 72.7
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 4.5e-106 389.8 394 54.6
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 4.8e-92 343.2 542 39.9
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.9e-89 334.0 203 76.8
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 4.8e-84 316.6 195 79.0
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 1.8e-83 314.7 688 33.7
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 4.7e-79 300.1 606 35.6
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 8.8e-78 295.8 557 35.2
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.7e-76 291.6 506 38.9
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 1.6e-74 285.0 537 36.7
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 5.0e-73 280.0 549 37.5
Ciclev10006112m.g Citrus clementina HOM05D003169 ORTHO05D003700 2.2e-65 254.6 151 80.1
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.2e-64 250.8 577 31.5
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 3.0e-62 244.2 466 37.3
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 7.5e-61 239.6 220 60.9
VMungo1127G0538 Vigna mungo HOM05D003169 ORTHO05D003700 5.9e-58 229.9 133 82.0
Oeu032680.1 Olea europaea HOM05D003169 ORTHO05D003700 8.0e-55 219.5 128 81.2
Aqoxy1G03228 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 7.0e-51 206.5 205 56.6
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 1.1e-48 199.1 170 61.2
Nitab4.5_0009958g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 5.6e-48 196.8 107 83.2
SEGI_10615 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 3.4e-45 187.6 115 81.7
SEGI_09386 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.8e-43 181.8 127 65.4
SGA_v2.0_scaffold26G11263 Striga asiatica HOM05D003169 ORTHO05D003700 3.4e-37 161.0 112 72.3
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 7.5e-37 159.8 196 51.0
SEGI_14617 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.1e-35 156.0 136 58.1
TPR.G40025 Trifolium pratense HOM05D003169 ORTHO05D003700 2.6e-29 134.8 98 61.2
Actinidia33339 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.3e-28 132.5 91 71.4
Nitab4.5_0020695g0020 Nicotiana tabacum HOM05D003169 ORTHO05D036887 8.3e-28 129.8 120 56.7
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 7.1e-27 126.7 74 86.5
TPR.G36388 Trifolium pratense HOM05D003169 ORTHO05D036887 2.1e-26 125.2 118 52.5
RhsimUnG0048600 Rhododendron simsii HOM05D003169 ORTHO05D003700 3.5e-26 124.4 76 84.2
Actinidia33340 Actinidia chinensis HOM05D003169 ORTHO05D003700 6.0e-26 123.6 77 84.4
Nn7g38412 Nelumbo nucifera HOM05D003169 ORTHO05D003700 7.8e-26 123.2 74 83.8
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 1.0e-25 122.9 74 85.1
BcaC03g15885 Brassica carinata HOM05D014255 ORTHO05D015450 5.6e-24 117.1 99 62.6
TPR.G20402 Trifolium pratense HOM05D003169 ORTHO05D003700 1.2e-23 115.9 60 95.0
BolC2t09653H Brassica oleracea HOM05D003169 ORTHO05D015450 6.2e-23 113.6 83 72.3
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 1.7e-20 105.5 130 44.6
TPR.G19390 Trifolium pratense HOM05D003169 ORTHO05D003700 3.2e-19 101.3 70 70.0
Dinv19571 Davidia involucrata HOM05D003169 ORTHO05D003700 2.7e-18 98.2 92 58.7
C02p36530 Brassica napus HOM05D003169 ORTHO05D015450 1.0e-17 96.3 73 68.5
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 1.3e-17 95.9 179 36.3
SEGI_25392 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 2.8e-15 88.2 75 54.7
Nitab4.5_0007774g0090 Nicotiana tabacum HOM05D003169 ORTHO05D036887 8.1e-15 86.7 117 46.2
TPR.G40298 Trifolium pratense HOM05D003169 ORTHO05D003700 3.1e-14 84.7 71 57.7
TPR.G7301 Trifolium pratense HOM05D003169 ORTHO05D003700 1.5e-13 82.4 55 67.3
BcaB02g10945 Brassica carinata HOM05D000798 ORTHO05D003700 2.6e-13 81.6 52 78.8
BcaB02g10953 Brassica carinata HOM05D000798 ORTHO05D003700 2.6e-13 81.6 52 78.8
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 6.4e-12 77.0 76 52.6
SEGI_01096 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 2.5e-08 65.1 52 55.8


User provided reference genes

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