Gene: Carub.0003s2548
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s2548
- Transcript Identifier Carub.0003s2548.1
- Gene Type Coding gene
- Location scaffold_3 : 9500633-9502931 : negative
Gene Family Information
- ID HOM05D000622
- #Genes/#Species 916/100
- Phylogenetic origin
- ID ORTHO05D000475
- #Genes/#Species 879/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0003s2548.v1.1
- pacid 39242730
- synonym Carubv10013543m.g
Descriptions
- Description PF02136//PF14259 - Nuclear transport factor 2 (NTF2) domain (NTF2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G25150 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR002075 | Nuclear transport factor 2 |
| IPR000504 | RNA recognition motif domain |
| IPR039539 | Ras GTPase-activating protein-binding protein |
| IPR018222 | Nuclear transport factor 2, eukaryote |
| IPR032710 | NTF2-like domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 16.8.1 | RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP) |