Gene: CSS0012238

General Information

Structural Information

  • Species Camellia sinensis var. sinensis
  • Gene Identifier CSS0012238
  • Transcript Identifier CSS0012238.1
  • Gene Type Coding gene
  • Location Contig778 : 720595-737986 : positive

Gene Family Information

  • ID HOM05D001007
  • #Genes/#Species 602/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid CSS0012238.1

Descriptions

  • Description PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic [Vitis vinifera]
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G70070
GO:1901259
ISO
PLAZA Integrative Orthologychloroplast rRNA processing AT1G70070
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G70070
GO:0006401
ISO
PLAZA Homology (enrichment)RNA catabolic process HOM05D001007
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing AT1G70070
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT1G70070
GO:0010497
ISO
PLAZA Integrative Orthologyplasmodesmata-mediated intercellular transport AT1G70070
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT1G70070

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G70070
GO:0003724
ISO
PLAZA Homology (enrichment)RNA helicase activity HOM05D001007
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G70070

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT1G70070
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT1G70070
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G70070

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR012961 ATP-dependent RNA helicase Ski2, C-terminal
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.11.4.1.1.3 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.RNA helicase (ISE2)