Gene: COL.COLO4_34990

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_34990
  • Transcript Identifier COL.rna33680
  • Gene Type Coding gene
  • Location AWUE01022473.1 : 50424-61957 : positive

Gene Family Information

  • ID HOM05D001240
  • #Genes/#Species 503/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna33680
  • GenBank OMO57925.1
  • id gene34962
  • gene_name COLO4_34990
  • uniprot A0A1R3GIK9

Descriptions

  • Description Zinc finger, RING-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0010390
IEA
GOA Databasehistone monoubiquitination
GO:0010390
IEA
InterProhistone monoubiquitination
GO:0006325
IEA
GOA Databasechromatin organization
GO:0010162
ISO
PLAZA Integrative Orthologyseed dormancy process AT1G55250
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT1G55250
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G55250
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT1G55250
GO:0033523
ISO
PLAZA Integrative Orthologyhistone H2B ubiquitination AT1G55250

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G55250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR013956 E3 ubiquitin ligase Bre1
Mapman id Description
19.2.2.1.4.3.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase