Gene: COL.COLO4_29355

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_29355
  • Transcript Identifier COL.rna28072
  • Gene Type Coding gene
  • Location AWUE01020332.1 : 16520-18020 : positive

Gene Family Information

  • ID HOM05D000390
  • #Genes/#Species 1264/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna28072
  • GenBank OMO68898.1
  • id gene29327
  • gene_name COLO4_29355
  • uniprot A0A1R3HF65

Descriptions

  • Description Seven-in-absentia protein, sina
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0006511
IEA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0007275
IEA
InterPromulticellular organism development
GO:2000785
ISO
PLAZA Integrative Orthologyregulation of autophagosome assembly AT3G58040
GO:0080148
ISO
PLAZA Integrative Orthologynegative regulation of response to water deprivation Os03g0356414

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0005515
IEA
InterProprotein binding
GO:0061630
ISO
PLAZA Integrative Orthologyubiquitin protein ligase activity AT4G27880

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IEA
InterProcytoplasm
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G27880
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G27880
GO:0012505
ISO
PLAZA Integrative Orthologyendomembrane system AT3G61790
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G27880

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR018121 Seven-in-absentia protein, TRAF-like domain
IPR008974 TRAF-like
Mapman id Description
19.2.2.1.4.3.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)