Gene: AT4G27880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G27880
  • Transcript Identifier AT4G27880.1
  • Gene Type Coding gene
  • Location Chr4 : 13883623-13884927 : positive

Gene Family Information

  • ID HOM05D000390
  • #Genes/#Species 1264/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G27880.1
  • uniprot Q9STN8

Descriptions

  • Description Protein with RING/U-box and TRAF-like domain
  • Computational description Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT3G61790.1); Has 1768 Blast hits to 1750 proteins in 698 species: Archae - 0; Bacteria - 0; Metazoa - 1225; Fungi - 9; Plants - 484; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007275
IEA
InterPromulticellular organism development
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0016567
IDA
IEA
Gene Ontologyprotein ubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IDA
IBA
Gene Ontologyubiquitin protein ligase activity1 2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008270
IEA
Gene Ontologyzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IPI
IBA
Gene Ontologycytoplasm1 2
GO:0005737
IEA
InterProcytoplasm
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion4
GO:0005634
IPI
ISM
Gene Ontologynucleus1
GO:0005886
IPI
Gene Ontologyplasma membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018121 Seven-in-absentia protein, TRAF-like domain
IPR008974 TRAF-like
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)