Gene: COL.COLO4_27775
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_27775
- Transcript Identifier COL.rna26498
- Gene Type Coding gene
- Location AWUE01019685.1 : 134461-148400 : negative
Gene Family Information
- ID HOM05D001522
- #Genes/#Species 417/99
- Phylogenetic origin
- ID ORTHO05D001547
- #Genes/#Species 391/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna26498
- GenBank OMO72216.1
- id gene27747
- gene_name COLO4_27775
- uniprot A0A1R3HP93
Descriptions
- Description Armadillo
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048481 | ISO | PLAZA Integrative Orthology | plant ovule development | AT1G68990 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G68990 |
| GO:0009860 | ISO | PLAZA Integrative Orthology | pollen tube growth | AT1G68990 |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0016567 | IEA | GOA Database | protein ubiquitination | |
| GO:0016567 | IEA | InterPro | protein ubiquitination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0034062 | ISO | PLAZA Integrative Orthology | 5'-3' RNA polymerase activity | AT5G15700 |
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0004842 | IEA | GOA Database | ubiquitin-protein transferase activity | |
| GO:0004842 | IEA | InterPro | ubiquitin-protein transferase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042651 | ISO | PLAZA Integrative Orthology | thylakoid membrane | AT5G15700 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT2G24120 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G15700 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029262 | DNA-directed RNA polymerase, N-terminal |
| IPR037159 | DNA-directed RNA polymerase, N-terminal domain superfamily |
| IPR011989 | Armadillo-like helical |
| IPR000225 | Armadillo |
| IPR016024 | Armadillo-type fold |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR003613 | U box domain |
| IPR002092 | DNA-directed RNA polymerase, phage-type |
| IPR024075 | DNA-directed RNA polymerase, helix hairpin domain superfamily |
| IPR043502 | DNA/RNA polymerase superfamily |
| Mapman id | Description |
|---|---|
| 15.6.1.1 | RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) |
| 19.2.2.1.4.2.1 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase |