Gene: COL.COLO4_26164

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_26164
  • Transcript Identifier COL.rna24895
  • Gene Type Coding gene
  • Location AWUE01019212.1 : 7408-10564 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna24895
  • GenBank OMO75378.1
  • id gene26136
  • gene_name COLO4_26164
  • uniprot A0A1R3HYD6

Descriptions

  • Description Zinc finger, CCHC-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT1G75660
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT1G75660
GO:0006139
ISO
PLAZA Homology (enrichment)nucleobase-containing compound metabolic process HOM05D000917
GO:0000967
ISO
PLAZA Integrative OrthologyrRNA 5'-end processing AT1G75660
GO:0071035
ISO
PLAZA Integrative Orthologynuclear polyadenylation-dependent rRNA catabolic process AT1G75660
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Cre06.g280050
GO:0004534
ISO
PLAZA Integrative Orthology5'-3' exoribonuclease activity AT1G75660
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G75660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR004859 Putative 5-3 exonuclease
IPR027073 5'-3' exoribonuclease
IPR041412 Xrn1, helical domain
IPR036875 Zinc finger, CCHC-type superfamily
Mapman id Description
16.4.3.2 RNA processing.RNA surveillance.non-canonical RNA decapping and decay.exoribonuclease (RAT1/XRN2)