Gene: COL.COLO4_23129
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_23129
- Transcript Identifier COL.rna21871
- Gene Type Coding gene
- Location AWUE01018156.1 : 7509-12493 : negative
Gene Family Information
- ID HOM05D001090
- #Genes/#Species 563/100
- Phylogenetic origin
- ID ORTHO05D002687
- #Genes/#Species 269/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna21871
- GenBank OMO82282.1
- id gene23101
- gene_name COLO4_23129
- uniprot A0A1R3II62
Descriptions
- Description Protein translocase subunit SecA
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009646 | ISO | PLAZA Integrative Orthology | response to absence of light | AT4G01800 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT4G01800 |
| GO:0010090 | ISO | PLAZA Integrative Orthology | trichome morphogenesis | AT4G01800 |
| GO:0010109 | ISO | PLAZA Integrative Orthology | regulation of photosynthesis | AT4G01800 |
| GO:0006886 | IEA | GOA Database | intracellular protein transport | |
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0006605 | IEA | GOA Database | protein targeting | |
| GO:0006605 | IEA | InterPro | protein targeting | |
| GO:0017038 | IEA | GOA Database | protein import | |
| GO:0017038 | IEA | InterPro | protein import | |
| GO:0071806 | IEA | GOA Database | protein transmembrane transport | |
| GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016464 | IEA | GOA Database | chloroplast protein-transporting ATPase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011130 | SecA, preprotein cross-linking domain |
| IPR011115 | SecA DEAD-like, N-terminal |
| IPR000185 | Protein translocase subunit SecA |
| IPR036266 | SecA, Wing/Scaffold superfamily |
| IPR044722 | SecA, C-terminal helicase domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011116 | SecA Wing/Scaffold |
| IPR036670 | SecA, preprotein cross-linking domain superfamily |
| Mapman id | Description |
|---|---|
| 23.1.5.1 | Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.component SecA1 |