Gene: COL.COLO4_19409

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_19409
  • Transcript Identifier COL.rna18172
  • Gene Type Coding gene
  • Location AWUE01016611.1 : 3359-5550 : positive

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna18172
  • GenBank OMO90065.1
  • id gene19381
  • gene_name COLO4_19409
  • uniprot A0A1R3J5D4

Descriptions

  • Description Tubulin
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G29550
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G12250
GO:0007010
IEA
GOA Databasecytoskeleton organization
GO:0007017
IEA
GOA Databasemicrotubule-based process
GO:0007017
IEA
InterPromicrotubule-based process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005200
IEA
GOA Databasestructural constituent of cytoskeleton
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G12250
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G62690
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
GOA DatabaseGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G12250
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT2G29550
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT2G29550
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G29550
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G29550
GO:0045298
ISO
PLAZA Integrative Orthologytubulin complex AT5G62700
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G29550
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005874
IEA
InterPromicrotubule
GO:0005856
IEA
GOA Databasecytoskeleton

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023123 Tubulin, C-terminal
IPR003008 Tubulin/FtsZ, GTPase domain
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR000217 Tubulin
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR002453 Beta tubulin
IPR037103 Tubulin/FtsZ-like, C-terminal domain
IPR008280 Tubulin/FtsZ, C-terminal
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin