Gene: COL.COLO4_17591

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_17591
  • Transcript Identifier COL.rna16355
  • Gene Type Coding gene
  • Location AWUE01016365.1 : 42941-52894 : negative

Gene Family Information

  • ID HOM05D000366
  • #Genes/#Species 1311/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna16355
  • GenBank OMO92413.1
  • id gene17563
  • gene_name COLO4_17591
  • uniprot A0A1R3JC33

Descriptions

  • Description Zinc finger, PHD-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043971
ISO
PLAZA Integrative Orthologyhistone H3-K18 acetylation AT3G14980
GO:0043972
ISO
PLAZA Integrative Orthologyhistone H3-K23 acetylation AT3G14980
GO:0044154
ISO
PLAZA Integrative Orthologyhistone H3-K14 acetylation AT3G14980
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT3G14980
GO:0044030
ISO
PLAZA Integrative Orthologyregulation of DNA methylation AT3G14980
GO:0006486
IEA
GOA Databaseprotein glycosylation
GO:0006486
IEA
InterProprotein glycosylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT3G14980
GO:0010385
ISO
PLAZA Integrative Orthologydouble-stranded methylated DNA binding AT3G14980
GO:0004402
ISO
PLAZA Integrative Orthologyhistone acetyltransferase activity AT3G14980
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016758
IEA
GOA Databasehexosyltransferase activity
GO:0016758
IEA
InterProhexosyltransferase activity
GO:0008080
IEA
GOA DatabaseN-acetyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G14980
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005634
IEA
GOA Databasenucleus
GO:0000139
IEA
GOA DatabaseGolgi membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016181 Acyl-CoA N-acyltransferase
IPR002659 Glycosyl transferase, family 31
IPR016177 DNA-binding domain superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR032308 Jas TPL-binding domain
IPR001965 Zinc finger, PHD-type
IPR019787 Zinc finger, PHD-finger
IPR031086 Increased DNA methylation 1
IPR011011 Zinc finger, FYVE/PHD-type
Mapman id Description
12.5.3.2.2 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.component IDM1
21.2.5.1.1 Cell wall organisation.hemicellulose.arabinogalactan.biosynthesis.beta-1,3-galactosyltransferase