Gene: COL.COLO4_13621

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_13621
  • Transcript Identifier COL.rna12407
  • Gene Type Coding gene
  • Location AWUE01015212.1 : 8883-14709 : negative

Gene Family Information

  • ID HOM05D003172
  • #Genes/#Species 215/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna12407
  • GenBank OMO98915.1
  • id gene13593
  • gene_name COLO4_13621
  • uniprot A0A1R3JVN2

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18230

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0030015
IEA
GOA DatabaseCCR4-NOT core complex
GO:0030015
IEA
InterProCCR4-NOT core complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007282 NOT2/NOT3/NOT5, C-terminal
IPR007207 CCR4-Not complex component, Not N-terminal domain
IPR038635 CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamily
IPR012270 CCR4-NOT complex, subunit 3/ 5
IPR040168 Not2/Not3/Not5
Mapman id Description
16.4.2.1.2.5 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT3/5