Gene: COL.COLO4_07762

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_07762
  • Transcript Identifier COL.rna6569
  • Gene Type Coding gene
  • Location AWUE01013456.1 : 147485-153872 : positive

Gene Family Information

  • ID HOM05D001876
  • #Genes/#Species 351/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna6569
  • GenBank OMP06965.1
  • id gene7734
  • gene_name COLO4_07762
  • uniprot A0A1R3KIQ7

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031087
IEA
GOA Databasedeadenylation-independent decapping of nuclear-transcribed mRNA
GO:0031087
IEA
InterProdeadenylation-independent decapping of nuclear-transcribed mRNA
GO:0010071
ISO
PLAZA Integrative Orthologyroot meristem specification AT3G13300
GO:0071365
ISO
PLAZA Integrative Orthologycellular response to auxin stimulus AT3G13300
GO:0010072
ISO
PLAZA Integrative Orthologyprimary shoot apical meristem specification AT3G13300
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT3G13300
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT3G13300
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT3G13300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT3G13300
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G13300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
IEA
GOA DatabaseP-body
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G13300
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G13300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045152 Enhancer of mRNA-decapping protein 4-like
IPR032401 Enhancer of mRNA-decapping protein 4, WD40 repeat region
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR044938 Enhancer of mRNA-decapping protein 4, conserved C-terminal domain
Mapman id Description
16.4.2.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.scaffold component VCS