Gene: CDE02G3406
General Information
Structural Information
- Species Ceratophyllum demersum
- Gene Identifier CDE02G3406
- Transcript Identifier CDE02G3406.1
- Gene Type Coding gene
- Location 1 : 26162837-26179548 : positive
Gene Family Information
- ID HOM05D000113
- #Genes/#Species 2932/100
- Phylogenetic origin
- ID ORTHO05D001798
- #Genes/#Species 354/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name gene_prefix05257
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006508 | IEA | InterPro | proteolysis | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc01g079250.3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004185 | IEA | InterPro | serine-type carboxypeptidase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G47250 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT2G47250 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G62310 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G62310 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007502 | Helicase-associated domain |
| IPR003593 | AAA+ ATPase domain |
| IPR029058 | Alpha/Beta hydrolase fold |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR001563 | Peptidase S10, serine carboxypeptidase |
| IPR044756 | DHX15, DEXH-box helicase domain |
| IPR011709 | Domain of unknown function DUF1605 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 16.2.7.3.3 | RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.Intron-Lariat Spliceosome (ILS) complex.helicase component Prp43 |
| 19.4.2.2 | Protein homeostasis.proteolysis.serine-type peptidase activities.S10-class serine carboxypeptidase (SCPL) |