Gene: AT3G62310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G62310
  • Transcript Identifier AT3G62310.1
  • Gene Type Coding gene
  • Location Chr3 : 23057516-23060561 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G62310.1
  • uniprot Q9LZQ9

Descriptions

  • Description RNA helicase family protein
  • Computational description RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT2G47250.1); Has 10517 Blast hits to 9531 proteins in 1639 species: Archae - 4; Bacteria - 3473; Metazoa - 2472; Fungi - 1291; Plants - 883; Viruses - 640; Other Eukaryotes - 1754 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g079250.3
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003724
IEA
Gene OntologyRNA helicase activity
GO:0003724
IEA
InterProRNA helicase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005829
IDA
GOA Databasecytosol
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus3
GO:0005622
IBA
Gene Ontologyintracellular anatomical structure1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007502 Helicase-associated domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR044756 DHX15, DEXH-box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR011709 Domain of unknown function DUF1605
Mapman id Description
16.2.7.3.3 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.Intron-Lariat Spliceosome (ILS) complex.helicase component Prp43