Gene: Ah.11g050960
General Information
Structural Information
- Species Amaranthus hybridus
- Gene Identifier Ah.11g050960
- Transcript Identifier Ah.11g050960-v1.1.a1
- Gene Type Coding gene
- Location AmaHy_arrow1_Scaffold_11 : 21847200-21871513 : negative
Gene Family Information
- ID HOM05D000201
- #Genes/#Species 1953/95
- Phylogenetic origin
- ID ORTHO05D000415
- #Genes/#Species 961/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Ah.11g050960-v1.1.a1
Descriptions
- Description Monocopper oxidase-like protein SKU5 (Skewed roots)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031047 | IEA | InterPro | gene silencing by RNA | |
| GO:0080188 | ISO | PLAZA Integrative Orthology | gene silencing by RNA-directed DNA methylation | AT1G80790 |
| GO:0010569 | ISO | PLAZA Integrative Orthology | regulation of double-strand break repair via homologous recombination | AT1G15910 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005507 | IEA | InterPro | copper ion binding | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0003723 | ISO | PLAZA Integrative Orthology | RNA binding | AT1G15910 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G15910 |
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT1G15910 |
| GO:0043621 | ISO | PLAZA Integrative Orthology | protein self-association | AT1G15910 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G15910 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR008972 | Cupredoxin |
| IPR005380 | XS domain |
| IPR009057 | Homeobox-like domain superfamily |
| IPR001356 | Homeobox domain |
| IPR034273 | Ascorbate oxidase homologue, first cupredoxin domain |
| IPR045087 | Multicopper oxidase |
| IPR011706 | Multicopper oxidase, C-terminal |
| IPR019787 | Zinc finger, PHD-finger |
| IPR005379 | Uncharacterised domain XH |
| IPR001117 | Multicopper oxidase, type 1 |
| IPR005381 | Zinc finger-XS domain |
| IPR038588 | XS domain superfamily |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001965 | Zinc finger, PHD-type |
| IPR011707 | Multicopper oxidase, N-termianl |
| IPR011011 | Zinc finger, FYVE/PHD-type |