Gene: Ah.03g135630
General Information
Structural Information
- Species Amaranthus hybridus
- Gene Identifier Ah.03g135630
- Transcript Identifier Ah.03g135630-v1.1.a1
- Gene Type Coding gene
- Location AmaHy_arrow1_Scaffold_3 : 4249422-4264493 : negative
Gene Family Information
- ID HOM05D002085
- #Genes/#Species 319/97
- Phylogenetic origin
- ID ORTHO05D006555
- #Genes/#Species 141/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Ah.03g135630-v1.1.a1
Descriptions
- Description RNA polymerase II C-terminal domain phosphatase-like 3 (FCP-like 3) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 3) (AtCPL3) (CTD phosphatase-like 3)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0070940 | IEA | InterPro | dephosphorylation of RNA polymerase II C-terminal domain | |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT2G33540 |
| GO:1900369 | ISO | PLAZA Integrative Orthology | negative regulation of RNA interference | AT2G33540 |
| GO:0009788 | ISO | PLAZA Integrative Orthology | negative regulation of abscisic acid-activated signaling pathway | AT2G33540 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0016779 | IEA | InterPro | nucleotidyltransferase activity | |
| GO:0004721 | IEA | InterPro | phosphoprotein phosphatase activity | |
| GO:0008420 | IEA | InterPro | RNA polymerase II CTD heptapeptide repeat phosphatase activity | |
| GO:0008022 | ISO | PLAZA Integrative Orthology | protein C-terminus binding | AT2G33540 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001357 | BRCT domain |
| IPR004274 | FCP1 homology domain |
| IPR036420 | BRCT domain superfamily |
| IPR002646 | Poly A polymerase, head domain |
| IPR011947 | FCP1-like phosphatase, phosphatase domain |
| IPR039189 | CTD phosphatase Fcp1 |
| IPR032828 | tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain |
| IPR023214 | HAD superfamily |
| IPR036412 | HAD-like superfamily |
| IPR043519 | Nucleotidyltransferase superfamily |
| Mapman id | Description |
|---|---|
| 18.4.26.1.6 | Protein modification.phosphorylation.protein aspartate phosphatase superfamily.FCP phosphatase families.subcluster H/CPL3-4 phosphatase |