Gene: ATR0772G062

General Information

Structural Information

  • Species Amborella trichopoda
  • Gene Identifier ATR0772G062
  • Transcript Identifier ATR0772G062.1
  • Gene Type Coding gene
  • Location AmTr_v1.0_scaffold00030 : 5300443-5301252 : positive

Gene Family Information

  • ID HOM05D000479
  • #Genes/#Species 1104/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id evm_27.TU.AmTr_v1.0_scaffold00030.201.v1.0
  • pacid 31556500

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002213
ISO
PLAZA Integrative Orthologydefense response to insect AT3G44260
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT3G44260
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT3G44260
GO:0000289
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA poly(A) tail shortening AT3G44260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0004535
IEA
InterPropoly(A)-specific ribonuclease activity
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT3G44260
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G44260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030014
IEA
InterProCCR4-NOT complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006941 Ribonuclease CAF1
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
IPR039637 CCR4-NOT transcription complex subunit 7/8/Pop2
Mapman id Description
16.4.2.1.2.2 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1