Gene: ATR0315G108
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0315G108
- Transcript Identifier ATR0315G108.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00109 : 922772-941050 : positive
Gene Family Information
- ID HOM05D000549
- #Genes/#Species 996/100
- Phylogenetic origin
- ID ORTHO05D001527
- #Genes/#Species 394/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00109.66.v1.0
- pacid 31570537
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009695 | ISO | PLAZA Integrative Orthology | jasmonic acid biosynthetic process | AT4G29010 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT4G29010 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT4G29010 |
| GO:0007275 | ISO | PLAZA Integrative Orthology | multicellular organism development | AT4G29010 |
| GO:0006635 | IEA | InterPro | fatty acid beta-oxidation | |
| GO:0006631 | IEA | InterPro | fatty acid metabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008017 | ISO | PLAZA Integrative Orthology | microtubule binding | Os02g0274100 |
| GO:0004300 | ISO | PLAZA Integrative Orthology | enoyl-CoA hydratase activity | AT4G29010 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | Os02g0274100 |
| GO:0003857 | ISO | PLAZA Integrative Orthology | 3-hydroxyacyl-CoA dehydrogenase activity | AT4G29010 |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0018812 | ISO | PLAZA Integrative Orthology | 3-hydroxyacyl-CoA dehydratase activity | Os02g0274100 |
| GO:0070403 | IEA | InterPro | NAD+ binding | |
| GO:0016616 | IEA | InterPro | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT4G29010 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G29010 |
| GO:0005777 | IEA | InterPro | peroxisome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001753 | Enoyl-CoA hydratase/isomerase |
| IPR029045 | ClpP/crotonase-like domain superfamily |
| IPR008927 | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily |
| IPR006108 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal |
| IPR033346 | Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like |
| IPR036291 | NAD(P)-binding domain superfamily |
| IPR006176 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding |
| Mapman id | Description |
|---|---|
| 5.7.3.2.2 | Lipid metabolism.lipid degradation.fatty acid degradation.core beta-oxidation.multifunctional enzyme (MFP) |