Gene: AT5G62410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G62410
  • Transcript Identifier AT5G62410.1
  • Gene Type Coding gene
  • Location Chr5 : 25056308-25062436 : positive

Gene Family Information

  • ID HOM05D002696
  • #Genes/#Species 255/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G62410.1
  • symbol SMC2
  • Alias ATCAP-E1,ATSMC4,TTN3,TITAN 3
  • uniprot Q9C5Y4

Descriptions

  • Description structural maintenance of chromosomes 2
  • Computational description structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051301
IEA
GOA Databasecell division
GO:0051276
IEA
GOA Databasechromosome organization
GO:0051276
IEA
InterProchromosome organization
GO:0030261
IEA
GOA Databasechromosome condensation
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0007049
IEA
GOA Databasecell cycle
GO:0007076
IBA
Gene Ontologymitotic chromosome condensation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0022857
ISS
Gene Ontologytransmembrane transporter activity2
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003682
IBA
Gene Ontologychromatin binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005694
IEA
InterProchromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0000793
IBA
Gene Ontologycondensed chromosome1
GO:0000785
IBA
Gene Ontologychromatin1
GO:0000796
ISS, IBA
Gene Ontologycondensin complex1 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR024704 Structural maintenance of chromosomes protein
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003395 RecF/RecN/SMC, N-terminal
IPR036277 SMCs flexible hinge superfamily
IPR010935 SMCs flexible hinge
IPR027120 Smc2, ATP-binding cassette domain
Mapman id Description
13.3.1.1.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-E2/SMC2