Gene: AT5G59830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G59830
  • Transcript Identifier AT5G59830.2
  • Gene Type Coding gene
  • Location Chr5 : 24105423-24107071 : positive

Gene Family Information

  • ID HOM05D002202
  • #Genes/#Species 305/87
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G59830.2
  • uniprot F4JXC7

Descriptions

  • Description DNA-binding protein
  • Computational description unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 174 Blast hits to 139 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
  • Computational description unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042742
IDA
Gene Ontologydefense response to bacterium1
GO:0045944
IBA
Gene Ontologypositive regulation of transcription by RNA polymerase II2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003916
IDA
Gene OntologyDNA topoisomerase activity1
GO:0042393
IBA
Gene Ontologyhistone binding2
GO:0003682
IBA
Gene Ontologychromatin binding2
GO:0000977
IBA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding2
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM, IBA
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032308 Jas TPL-binding domain
Mapman id Description
35.1 not assigned.annotated