Gene: AT5G59830
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G59830
- Transcript Identifier AT5G59830.2
- Gene Type Coding gene
- Location Chr5 : 24105423-24107071 : positive
Gene Family Information
- ID HOM05D002202
- #Genes/#Species 305/87
- Phylogenetic origin
- ID ORTHO05D002176
- #Genes/#Species 310/87
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G59830.2
- uniprot F4JXC7
Descriptions
- Description DNA-binding protein
- Computational description unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 174 Blast hits to 139 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
- Computational description unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0042742 | IDA | Gene Ontology | defense response to bacterium | 1 |
GO:0045944 | IBA | Gene Ontology | positive regulation of transcription by RNA polymerase II | 2 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003916 | IDA | Gene Ontology | DNA topoisomerase activity | 1 |
GO:0042393 | IBA | Gene Ontology | histone binding | 2 |
GO:0003682 | IBA | Gene Ontology | chromatin binding | 2 |
GO:0000977 | IBA | Gene Ontology | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 2 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR032308 | Jas TPL-binding domain |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |