Gene: AT5G59820

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G59820
  • Transcript Identifier AT5G59820.1
  • Gene Type Coding gene
  • Location Chr5 : 24103073-24103561 : positive

Gene Family Information

  • ID HOM05D000174
  • #Genes/#Species 2155/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G59820.1
  • symbol RHL41
  • Alias AtZAT12,ZAT12
  • full_name RESPONSIVE TO HIGH LIGHT 41
  • uniprot Q42410

Descriptions

  • Description C2H2-type zinc finger family protein
  • Computational description RESPONSIVE TO HIGH LIGHT 41 (RHL41); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 11 processes; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G46080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009611
IMP, IEP
Gene Ontologyresponse to wounding1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0010200
IEP
IBA
Gene Ontologyresponse to chitin2 3
GO:0006950
IBA
Gene Ontologyresponse to stress3
GO:0071456
HEP
Gene Ontologycellular response to hypoxia4
GO:0010224
IEP
Gene Ontologyresponse to UV-B5
GO:0042538
IMP, IEP
Gene Ontologyhyperosmotic salinity response1
GO:0009416
IMP
Gene Ontologyresponse to light stimulus1
GO:0009408
IMP, IEP
Gene Ontologyresponse to heat1
GO:0006979
IMP, IEP
Gene Ontologyresponse to oxidative stress1
GO:0009631
IMP
Gene Ontologycold acclimation6
GO:0009409
IEP
Gene Ontologyresponse to cold6
GO:0009643
IMP
Gene Ontologyphotosynthetic acclimation7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding8
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity9

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036236 Zinc finger C2H2 superfamily
IPR013087 Zinc finger C2H2-type
Mapman id Description
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)