Gene: AT5G59550

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G59550
  • Transcript Identifier AT5G59550.2
  • Gene Type Coding gene
  • Location Chr5 : 23998422-23999960 : negative

Gene Family Information

  • ID HOM05D000082
  • #Genes/#Species 3688/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G59550.2
  • symbol RDUF2
  • Alias AtRDUF2,Arabidopsis thaliana RING and Domain of Unknown Function 1117 2
  • full_name RING and Domain of Unknown Function 1117 2
  • uniprot Q940T5

Descriptions

  • Description zinc finger (C3HC4-type RING finger) family protein
  • Computational description zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009738
IEA
GOA Databaseabscisic acid-activated signaling pathway
GO:0010200
IEP
GOA Databaseresponse to chitin
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1
GO:0051865
IDA
Gene Ontologyprotein autoubiquitination2
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid2
GO:0009414
IMP
Gene Ontologyresponse to water deprivation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IBA
IEA
Gene Ontologyubiquitin protein ligase activity1
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005829
IEA
GOA Databasecytosol
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR039525 E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon
IPR010543 Domain of unknown function DUF1117
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.3.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.BTL-subclass ligase