Gene: AT5G58610
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G58610
- Transcript Identifier AT5G58610.3
- Gene Type Coding gene
- Location Chr5 : 23686353-23691192 : negative
Gene Family Information
- ID HOM05D000366
- #Genes/#Species 1311/100
- Phylogenetic origin
- ID ORTHO05D000437
- #Genes/#Species 931/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G58610.3
- uniprot F4KGA3
Descriptions
- Description PHD finger transcription factor
- Computational description PHD finger transcription factor, putative; FUNCTIONS IN: RNA binding, DNA binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent, response to chitin; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT1G05380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010200 | IEP | GOA Database | response to chitin |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR019787 | Zinc finger, PHD-finger |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR016181 | Acyl-CoA N-acyltransferase |
| IPR001965 | Zinc finger, PHD-type |
| IPR032308 | Jas TPL-binding domain |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR008395 | Agenet-like domain |
| IPR014002 | Agenet domain, plant type |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |