Gene: AT5G56930
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G56930
- Transcript Identifier AT5G56930.1
- Gene Type Coding gene
- Location Chr5 : 23027949-23030565 : negative
Gene Family Information
- ID HOM05D010535
- #Genes/#Species 21/13
- Phylogenetic origin
- ID ORTHO05D005895
- #Genes/#Species 150/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G56930.1
- symbol EMB1789
- full_name embryo defective 1789
- uniprot Q9LTS7
Descriptions
- Description CCCH-type zinc finger family protein
- Computational description embryo defective 1789 (emb1789); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 4013 Blast hits to 1845 proteins in 273 species: Archae - 0; Bacteria - 114; Metazoa - 1017; Fungi - 647; Plants - 283; Viruses - 3; Other Eukaryotes - 1949 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009793 | NAS | Gene Ontology | embryo development ending in seed dormancy | |
| GO:0045892 | IEA | Gene Ontology | negative regulation of transcription, DNA-templated | |
| GO:0045892 | IEA | InterPro | negative regulation of transcription, DNA-templated | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0004518 | IEA | GOA Database | nuclease activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.16 | RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF) |