Gene: AT5G56670
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G56670
- Transcript Identifier AT5G56670.1
- Gene Type Coding gene
- Location Chr5 : 22935413-22935981 : negative
Gene Family Information
- ID HOM05D001088
- #Genes/#Species 563/99
- Phylogenetic origin
- ID ORTHO05D003028
- #Genes/#Species 247/82
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G56670.1
- uniprot P49689
Descriptions
- Description Ribosomal protein S30 family protein
- Computational description Ribosomal protein S30 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: Ribosomal protein S30 family protein (TAIR:AT4G29390.1); Has 682 Blast hits to 682 proteins in 246 species: Archae - 2; Bacteria - 0; Metazoa - 304; Fungi - 135; Plants - 106; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048208 | ISO | PLAZA Homology (enrichment) | COPII vesicle coating | HOM05D001088 |
| GO:0006914 | ISO | PLAZA Homology (enrichment) | autophagy | HOM05D001088 |
| GO:0006412 | IEA | Gene Ontology | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IDA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | HDA | GOA Database | mitochondrion | |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0022627 | IDA IBA | GOA Database | cytosolic small ribosomal subunit | |
| GO:0022627 | HDA | Gene Ontology | cytosolic small ribosomal subunit | 2 |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005886 | HDA | GOA Database | plasma membrane | |
| GO:0005730 | IDA | GOA Database | nucleolus | |
| GO:0009536 | HDA | Gene Ontology | plastid | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006846 | Ribosomal protein S30 |
| Mapman id | Description |
|---|---|
| 17.1.3.1.32 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS30 |