Gene: AT5G54960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54960
  • Transcript Identifier AT5G54960.1
  • Gene Type Coding gene
  • Location Chr5 : 22310858-22312681 : negative

Gene Family Information

  • ID HOM05D001155
  • #Genes/#Species 535/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54960.1
  • symbol PDC2
  • uniprot Q9FFT4

Descriptions

  • Description pyruvate decarboxylase-2
  • Computational description pyruvate decarboxylase-2 (PDC2); FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, carboxy-lyase activity, thiamin pyrophosphate binding, catalytic activity; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT4G33070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071456
HEP
Gene Ontologycellular response to hypoxia1
GO:0001666
IEP
Gene Ontologyresponse to hypoxia2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016831
IEA
GOA Databasecarboxy-lyase activity
GO:0016831
IBA
Gene Ontologycarboxy-lyase activity3
GO:0016831
IEA
InterProcarboxy-lyase activity
GO:0000287
IEA
Gene Ontologymagnesium ion binding
GO:0000287
IEA
InterPromagnesium ion binding
GO:0030976
IEA
Gene Ontologythiamine pyrophosphate binding
GO:0030976
IEA
InterProthiamine pyrophosphate binding
GO:0016829
IEA
GOA Databaselyase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004737
IEA
Gene Ontologypyruvate decarboxylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol3 4
GO:0009536
HDA
Gene Ontologyplastid5
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029061 Thiamin diphosphate-binding fold
IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
IPR012000 Thiamine pyrophosphate enzyme, central domain
IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme
IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding
IPR029035 DHS-like NAD/FAD-binding domain superfamily
Mapman id Description
3.11.1.1 Carbohydrate metabolism.fermentation.acetic acid biosynthesis.pyruvate decarboxylase (PDC)