Gene: AT5G51200
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G51200
- Transcript Identifier AT5G51200.2
- Gene Type Coding gene
- Location Chr5 : 20804926-20819408 : positive
Gene Family Information
- ID HOM05D003776
- #Genes/#Species 183/95
- Phylogenetic origin
- ID ORTHO05D004459
- #Genes/#Species 180/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G51200.2
- symbol EMB3142
- full_name EMBRYO DEFECTIVE 3142
- uniprot F4KBW6
Descriptions
- Description nuclear pore complex protein (DUF3414)
- Computational description Protein of unknown function (DUF3414); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); Has 203 Blast hits to 190 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 18; Plants - 55; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009862 | IMP | Gene Ontology | systemic acquired resistance, salicylic acid mediated signaling pathway | 1 |
| GO:0009682 | IMP | Gene Ontology | induced systemic resistance | 2 |
| GO:0032922 | IMP | Gene Ontology | circadian regulation of gene expression | 3 |
| GO:0009617 | IMP | Gene Ontology | response to bacterium | 4 |
| GO:0051028 | IEA | GOA Database | mRNA transport | |
| GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005643 | IEA | Gene Ontology | nuclear pore | |
| GO:0005643 | IEA | InterPro | nuclear pore | |
| GO:0005635 | IEA | GOA Database | nuclear envelope | |
| GO:0005635 | IDA | Gene Ontology | nuclear envelope | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR021827 | Nucleoporin Nup186/Nup192/Nup205 |
| Mapman id | Description |
|---|---|
| 23.5.1.1.2.1 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.scaffold nucleoporin (NUP205) |