Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 3617.4 1864 100.0
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 3545.0 1870 97.5
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 3434.8 1870 94.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 3427.9 1864 94.3
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 3378.2 1865 92.9
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 3267.2 1865 89.8
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 3253.4 1904 89.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 3241.1 1870 89.8
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 3225.3 1870 89.4
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 3220.6 1871 89.3
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 3072.3 1871 84.6
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 3009.2 1877 81.7
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2624.0 1882 71.3
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2615.9 1884 70.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2582.7 1880 69.4
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2573.9 1882 69.4
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2552.7 1887 68.4
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2549.2 1882 68.4
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2545.8 1884 68.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2544.6 1884 68.4
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2541.5 1881 68.7
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2530.0 1883 67.8
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2529.6 1883 68.0
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2524.6 1883 67.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2518.8 1898 68.5
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2509.6 1883 67.4
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2504.9 1886 68.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2494.9 1886 67.3
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2484.1 1911 67.2
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2480.3 1887 67.0
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2479.5 1886 66.8
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2472.6 1915 66.7
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2469.9 1883 66.5
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2468.0 1910 67.2
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2463.3 1888 66.9
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2456.8 1891 66.6
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2453.7 1889 66.5
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2450.2 1882 66.7
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2450.2 1884 66.3
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2449.1 1896 66.3
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2447.2 1889 66.1
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2445.6 1896 66.3
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2441.4 1896 66.0
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2426.4 1946 65.3
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2422.5 1886 65.2
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2419.8 2018 63.7
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2415.6 1884 65.0
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2408.3 1888 66.6
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2395.5 1880 65.3
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2389.4 1880 65.3
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2382.8 1884 64.5
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2379.0 1887 64.3
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2363.2 1884 63.8
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2362.0 1884 64.7
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2345.1 1883 63.7
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2339.3 1884 64.3
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2332.4 1881 63.3
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2328.5 1708 69.6
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2327.4 1870 64.4
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2310.8 1893 63.4
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2309.6 1884 63.1
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2305.8 1894 63.3
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2299.2 1950 61.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2298.1 1888 63.3
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2295.0 1880 61.9
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2272.7 1904 61.9
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2270.4 1947 61.6
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2253.4 2314 54.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2251.1 2018 58.7
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2236.1 1886 61.4
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2217.6 1880 61.2
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2210.6 1879 61.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2210.3 1629 68.8
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2179.8 1582 70.1
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2151.3 1915 59.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2149.4 1877 59.5
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2035.8 1498 69.4
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2018.0 1469 70.4
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1818.5 1457 64.5
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1813.9 1586 59.3
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1736.5 1425 62.3
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1691.4 1910 48.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1665.2 1185 70.5
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1623.6 1907 46.1
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1605.9 1899 46.5
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1553.9 1421 58.1
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1542.3 1441 56.1
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1488.0 1923 43.7
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1414.1 1874 46.2
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1350.9 1219 56.8
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1286.6 1233 54.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1258.0 1868 39.1
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1172.5 957 64.8
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1166.4 840 68.1
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1157.9 1108 57.4
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-306 1056.6 1637 42.6
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.7e-301 1039.3 1235 47.2
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.7e-280 969.9 783 62.5
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-277 961.1 1637 40.1
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.4e-262 909.4 783 57.6
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.7e-240 836.3 739 56.3
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 9.2e-236 822.0 697 63.0
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 9.9e-230 802.0 690 61.7
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 4.6e-211 740.0 1011 45.0
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.9e-196 691.4 1029 39.7
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 4.3e-193 680.2 1043 39.4
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.4e-191 675.2 602 59.5
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.2e-190 672.2 518 67.6
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.2e-188 664.1 702 51.1
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 6.1e-171 606.7 512 63.1
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.1e-159 567.4 491 62.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 5.6e-124 450.7 400 56.5
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-110 406.0 296 68.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.5e-108 398.7 419 54.2
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 9.0e-106 390.2 408 53.9
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 3.8e-88 331.6 228 73.7
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.2e-86 326.6 329 55.6
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.9e-86 323.9 210 76.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 1.8e-82 312.8 325 53.5
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 3.1e-82 312.0 330 55.2
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 4.6e-78 298.1 272 56.6
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.1e-77 294.7 355 46.5
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 6.7e-77 294.3 314 54.1
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 1.1e-76 293.5 307 51.8
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 4.2e-71 275.0 315 51.7
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.8e-69 269.6 266 58.3
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 2.9e-64 252.3 176 72.7
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.3e-58 231.5 227 52.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.3e-58 231.5 227 52.9
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.1e-58 230.7 180 63.3
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 3.0e-53 215.7 212 58.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.6e-49 203.4 385 37.4
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.9e-48 199.1 216 50.5
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 1.1e-47 197.2 1721 22.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.2e-47 195.3 255 44.7
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 9.4e-47 194.1 331 40.2
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 8.8e-45 187.6 297 39.7
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 2.7e-38 166.0 403 34.7
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.5e-36 160.2 126 65.1
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 2.0e-36 159.8 126 64.3
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.8e-35 156.0 155 59.4
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 3.3e-31 142.5 157 52.9
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.6e-30 139.0 124 58.1
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 6.1e-30 138.3 315 29.8
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 3.0e-29 136.0 77 77.9
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 6.8e-29 134.8 166 50.0
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 2.6e-28 132.9 97 67.0
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 9.8e-28 131.0 75 84.0
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 1.7e-27 130.2 773 22.5
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 4.5e-25 122.1 97 60.8
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 5.9e-25 121.7 117 55.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.5e-23 116.3 105 56.2
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 5.6e-23 115.2 963 23.3
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 5.2e-21 108.6 147 45.6
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 1.5e-20 107.1 81 66.7
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.7e-17 96.3 73 64.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-16 92.4 56 78.6
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.3e-15 89.4 55 74.5
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.3e-15 89.4 100 47.0
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 4.7e-14 85.5 100 51.0
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 8.0e-14 84.7 100 50.0
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.7e-11 75.9 105 42.9
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.4e-10 73.9 64 51.6
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.4e-10 73.9 66 59.1
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.9e-10 73.6 46 76.1
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 7.0e-10 71.6 79 45.6
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.1e-09 70.1 37 81.1
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 4.6e-09 68.9 144 36.8
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 7.8e-09 68.2 70 52.9
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 6.6e-08 65.1 49 61.2
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-07 64.3 43 60.5
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 1.5e-07 63.9 44 70.5
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 2.5e-07 63.2 60 58.3
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 7.3e-07 61.6 113 36.3
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 9.5e-07 61.2 34 76.5
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.2e-06 60.8 74 44.6


User provided reference genes

Program Settings