Gene: AT5G49930

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G49930
  • Transcript Identifier AT5G49930.1
  • Gene Type Coding gene
  • Location Chr5 : 20308260-20312736 : negative

Gene Family Information

  • ID HOM05D004611
  • #Genes/#Species 157/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G49930.1
  • symbol emb1441
  • full_name embryo defective 1441
  • uniprot Q9LTX7

Descriptions

  • Description zinc knuckle (CCHC-type) family protein
  • Computational description embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Protein of unknown function DUF3441 (InterPro:IPR021846), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0072344
IBA
Gene Ontologyrescue of stalled ribosome1
GO:1990116
IBA
Gene Ontologyribosome-associated ubiquitin-dependent protein catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0043023
IBA
Gene Ontologyribosomal large subunit binding1
GO:0000049
IBA
Gene OntologytRNA binding1
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009536
HDA
Gene Ontologyplastid2
GO:1990112
IBA
Gene OntologyRQC complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001878 Zinc finger, CCHC-type
IPR021846 NFACT protein, C-terminal
IPR036875 Zinc finger, CCHC-type superfamily
IPR008532 NFACT, RNA-binding domain
Mapman id Description
17.3.3.2.3 Protein biosynthesis.mRNA quality control.NGD No-Go Decay.Ribosome-associated Quality Control (RQC) complex.component RQC2