Gene: AT5G49930
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G49930
- Transcript Identifier AT5G49930.1
- Gene Type Coding gene
- Location Chr5 : 20308260-20312736 : negative
Gene Family Information
- ID HOM05D004611
- #Genes/#Species 157/95
- Phylogenetic origin
- ID ORTHO05D005794
- #Genes/#Species 152/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G49930.1
- symbol emb1441
- full_name embryo defective 1441
- uniprot Q9LTX7
Descriptions
- Description zinc knuckle (CCHC-type) family protein
- Computational description embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Protein of unknown function DUF3441 (InterPro:IPR021846), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009793 | NAS | Gene Ontology | embryo development ending in seed dormancy | |
GO:0072344 | IBA | Gene Ontology | rescue of stalled ribosome | 1 |
GO:1990116 | IBA | Gene Ontology | ribosome-associated ubiquitin-dependent protein catabolic process | 1 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0043023 | IBA | Gene Ontology | ribosomal large subunit binding | 1 |
GO:0000049 | IBA | Gene Ontology | tRNA binding | 1 |
GO:0003676 | IEA | GOA Database | nucleic acid binding | |
GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISM | Gene Ontology | nucleus | |
GO:0009536 | HDA | Gene Ontology | plastid | 2 |
GO:1990112 | IBA | Gene Ontology | RQC complex | 1 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
17.3.3.2.3 | Protein biosynthesis.mRNA quality control.NGD No-Go Decay.Ribosome-associated Quality Control (RQC) complex.component RQC2 |