Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 2030.8 1081 100.0
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1979.1 1081 97.3
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1916.0 1081 94.1
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1894.0 1084 93.3
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1860.1 1104 90.4
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1840.1 1106 90.5
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1822.0 1098 89.6
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1819.3 1098 89.5
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1819.3 1100 89.4
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1816.6 1100 89.3
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1814.3 1101 89.2
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1811.2 1102 89.0
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1741.5 1079 86.4
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1612.0 1082 80.9
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1461.4 1149 70.5
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1457.6 1155 70.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1456.4 1121 72.2
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1454.5 1120 71.6
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1446.4 1124 69.6
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1446.4 1135 69.3
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1445.6 1154 68.5
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1441.8 1123 70.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1123 71.4
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1437.6 1124 69.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1436.0 1123 71.4
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1432.2 1124 71.0
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1140 68.2
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1150 67.7
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1424.8 1167 67.1
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1155 69.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1422.5 1135 68.4
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1421.8 1166 66.6
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1420.2 1166 68.4
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1417.9 1124 70.5
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1417.1 1124 68.6
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1415.6 1140 67.5
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1414.1 1153 69.0
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1412.9 1137 67.7
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1412.5 1140 67.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1412.5 1151 67.7
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1412.5 1147 67.4
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1409.4 1157 68.7
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1408.3 1147 69.0
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1408.3 1140 69.6
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1145 69.3
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1405.6 1153 67.0
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1405.2 1144 67.5
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1403.7 1151 67.9
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1403.7 1143 67.0
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1400.6 1142 69.4
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1396.3 1151 67.6
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1147 68.4
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1395.6 1184 65.2
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1392.1 1139 68.7
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1389.0 1146 69.1
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1389.0 1146 69.1
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1384.8 1139 68.6
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1384.0 1185 65.1
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1382.5 1147 66.7
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1130 68.1
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1152 67.4
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1078 70.2
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1150 67.5
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1373.6 1138 68.3
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1367.1 1137 68.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1366.3 1128 68.0
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1364.4 1180 65.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1355.5 1125 68.4
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1351.7 1140 67.9
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1347.4 1151 64.3
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1345.1 1150 66.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1342.8 1156 66.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1342.8 1138 65.6
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1340.1 1145 65.8
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1338.9 1169 64.4
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1335.5 1123 66.7
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1323.5 1131 65.9
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1323.1 1100 67.6
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1316.2 1128 66.7
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1308.9 1166 63.6
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1305.4 1191 62.0
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1296.2 1115 66.3
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1291.6 1203 61.3
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1280.4 1143 62.4
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1275.8 1154 61.4
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1274.6 1152 62.6
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1167.1 937 69.6
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1122.8 891 69.7
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.2e-311 1072.4 1027 62.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 9.9e-307 1057.0 1238 50.6
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 2.4e-305 1052.4 1212 52.6
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 3.5e-304 1048.5 1197 52.3
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.8e-296 1020.8 1091 55.5
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.9e-290 1002.3 741 70.3
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.9e-289 999.6 917 62.1
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.1e-256 889.8 725 65.2
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.3e-246 855.9 1406 40.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.7e-234 817.0 590 73.2
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 5.5e-233 812.0 588 76.2
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 3.1e-207 726.5 518 73.0
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 6.8e-207 725.3 518 73.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.9e-204 717.2 502 74.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.0e-202 711.4 615 61.8
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 4.3e-185 652.9 608 59.2
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 4.9e-181 639.4 570 62.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 4.6e-171 606.3 1117 37.3
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 6.0e-163 579.3 564 58.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.9e-154 550.1 534 57.1
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.7e-144 516.9 537 54.9
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 7.4e-137 492.7 389 68.1
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.1e-135 486.9 459 61.2
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 8.5e-125 452.6 322 73.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 6.1e-123 446.4 537 50.5
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.8e-112 410.2 312 69.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.7e-101 375.2 1149 28.7
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.3e-100 370.9 467 49.7
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.4e-95 355.5 539 43.8
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 4.6e-94 350.5 1131 29.3
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.6e-91 340.9 347 57.6
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.9e-88 331.3 363 51.8
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.6e-85 320.1 380 51.3
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-84 317.4 211 76.3
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-76 292.7 374 49.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.6e-75 287.7 261 54.8
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.7e-70 271.6 250 58.4
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.4e-65 254.6 147 83.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.8e-64 251.1 149 83.9
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 4.2e-63 247.7 217 63.1
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-58 232.6 181 66.3
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 2.4e-58 231.9 180 66.7
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.8e-51 207.6 194 57.7
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.3e-50 204.1 106 94.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 5.8e-49 200.7 351 41.6
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 4.9e-48 197.6 113 85.0
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.3e-47 193.4 111 84.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-46 193.0 350 39.4
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-46 191.8 113 83.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 7.9e-46 190.3 351 41.0
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.3e-45 189.5 351 40.5
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 5.1e-45 187.6 113 81.4
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 5.1e-45 187.6 113 81.4
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 4.0e-42 177.9 186 56.5
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 6.9e-42 177.2 109 80.7
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.5e-41 174.5 106 83.0
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.7e-40 172.6 578 29.2
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-38 165.6 99 82.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-38 165.2 89 89.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.3e-37 162.9 97 81.4
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 9.0e-34 150.2 82 90.2
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-28 133.3 127 52.0
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.5e-28 132.1 120 57.5
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.9e-23 115.9 71 81.7
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.0e-21 110.2 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.0e-21 108.6 75 72.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 4.4e-20 104.8 85 62.4
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.7e-20 104.4 152 44.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.2e-17 96.7 91 56.0
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.2e-16 92.4 173 42.8


User provided reference genes

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