Gene: AT5G42890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G42890
  • Transcript Identifier AT5G42890.1
  • Gene Type Coding gene
  • Location Chr5 : 17194458-17195910 : negative

Gene Family Information

  • ID HOM05D004883
  • #Genes/#Species 151/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G42890.1
  • symbol SCP2
  • Alias ATSCP2,STEROL CARRIER PROTEIN 2
  • uniprot Q9FMN0

Descriptions

  • Description sterol carrier protein 2
  • Computational description sterol carrier protein 2 (SCP2); FUNCTIONS IN: oxidoreductase activity, sterol binding; INVOLVED IN: glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination; LOCATED IN: peroxisome; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: SCP2 sterol-binding domain (InterPro:IPR003033), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032365
IDA
TAS
Gene Ontologyintracellular lipid transport1 2
GO:0006635
IEP
Gene Ontologyfatty acid beta-oxidation2
GO:0009646
IEP
Gene Ontologyresponse to absence of light2
GO:0009744
IEP
Gene Ontologyresponse to sucrose2
GO:0009845
IMP
Gene Ontologyseed germination2
GO:0046487
IMP
Gene Ontologyglyoxylate metabolic process2
GO:0048317
IMP
Gene Ontologyseed morphogenesis2
GO:0006869
IEA
GOA Databaselipid transport

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005777
IEA
GOA Databaseperoxisome
GO:0005777
IDA, HDA
Gene Ontologyperoxisome1 3
GO:0005829
IBA
Gene Ontologycytosol4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003033 SCP2 sterol-binding domain
IPR036527 SCP2 sterol-binding domain superfamily
IPR039543 Lipid-binding protein POX18/UbiT/NSL-TP1
Mapman id Description
35.1 not assigned.annotated