Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 2.4e-63 245.4 124 100.0
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 1.0e-61 240.0 124 96.8
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 2.9e-61 238.4 124 96.0
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 95.2
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 95.2
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 95.2
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 95.2
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 4.9e-61 237.7 124 95.2
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 6.5e-61 237.3 124 95.2
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 1.1e-60 236.5 124 94.4
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.9e-60 235.7 124 94.4
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 5.5e-60 234.2 124 94.4
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 2.3e-58 228.8 124 91.9
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.9e-57 225.7 121 92.6
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 9.6e-57 223.4 124 93.5
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.6e-56 222.6 121 90.9
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 4.1e-55 218.0 125 82.4
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.5e-54 216.1 124 83.9
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 2.6e-54 215.3 124 83.1
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 3.4e-54 214.9 121 85.1
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 3.4e-54 214.9 124 83.1
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.5e-54 214.5 124 83.1
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 7.6e-54 213.8 124 83.1
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.2e-53 212.2 123 82.1
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.8e-53 211.5 124 82.3
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 5.0e-53 211.1 122 82.0
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 8.4e-53 210.3 124 81.5
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.1e-52 209.9 124 83.1
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 1.9e-52 209.1 125 82.4
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 2.5e-52 208.8 125 83.2
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 5.5e-52 207.6 121 81.8
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 5.5e-52 207.6 123 81.3
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 7.2e-52 207.2 123 82.1
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 9.3e-52 206.8 123 82.1
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 2.1e-51 205.7 125 80.8
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 2.7e-51 205.3 124 81.5
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 3.5e-51 204.9 119 83.2
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 3.5e-51 204.9 119 83.2
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 4.6e-51 204.5 123 79.7
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 4.6e-51 204.5 122 81.1
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 6.1e-51 204.1 123 79.7
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 7.9e-51 203.8 123 80.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 7.9e-51 203.8 123 80.5
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 7.9e-51 203.8 122 81.1
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.0e-50 203.4 122 81.1
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.0e-50 203.4 125 80.0
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.0e-50 203.4 122 79.5
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.3e-50 203.0 123 78.0
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.3e-50 203.0 123 78.0
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 123 77.2
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.8e-50 202.6 123 78.0
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.8e-50 202.6 123 78.0
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 111 87.4
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 3.0e-50 201.8 152 69.7
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 3.0e-50 201.8 123 78.9
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 3.9e-50 201.4 119 81.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 8.7e-50 200.3 123 78.0
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 8.7e-50 200.3 122 79.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.1e-49 199.9 123 78.0
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.1e-49 199.9 125 79.2
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.1e-49 199.9 122 79.5
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.1e-49 199.9 122 79.5
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 1.9e-49 199.1 122 76.2
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.9e-49 199.1 122 77.0
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 2.5e-49 198.7 123 75.6
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 2.5e-49 198.7 126 79.4
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 3.3e-49 198.4 123 76.4
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 3.3e-49 198.4 125 78.4
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 122 77.9
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 3.3e-49 198.4 122 78.7
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 4.3e-49 198.0 123 76.4
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 5.7e-49 197.6 123 74.8
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 5.7e-49 197.6 121 78.5
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 7.4e-49 197.2 122 74.6
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.4e-49 197.2 120 77.5
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 7.4e-49 197.2 120 77.5
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 7.4e-49 197.2 122 74.6
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 9.7e-49 196.8 122 77.9
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 9.7e-49 196.8 124 75.8
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 9.7e-49 196.8 123 74.8
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 76.4
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.6e-48 196.1 109 86.2
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.2e-48 195.7 122 77.9
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 4.8e-48 194.5 122 76.2
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 4.8e-48 194.5 123 72.4
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.4e-47 193.0 119 81.5
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.4e-47 193.0 123 73.2
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 1.8e-47 192.6 124 75.8
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 5.3e-47 191.0 123 71.5
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 5.3e-47 191.0 125 75.2
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.2e-46 189.9 124 71.0
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 2.0e-46 189.1 124 75.0
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.6e-46 188.7 122 73.0
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.6e-46 188.7 122 73.0
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 2.6e-46 188.7 119 74.8
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.6e-46 188.7 124 75.0
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.4e-46 188.3 123 74.8
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 4.5e-46 188.0 124 75.8
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 7.7e-46 187.2 123 74.8
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 2.2e-45 185.7 124 71.0
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 3.8e-45 184.9 120 76.7
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.8e-45 184.9 123 74.0
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.1e-44 183.3 123 69.9
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.4e-44 183.0 123 74.8
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 3.2e-44 181.8 124 68.5
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 4.2e-44 181.4 125 75.2
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 5.5e-44 181.0 129 65.9
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 9.4e-44 180.3 107 86.9
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.6e-43 179.5 119 72.3
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.1e-43 179.1 124 69.4
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 7.9e-43 177.2 111 80.2
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.4e-42 176.4 123 66.7
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 5.7e-41 171.0 124 66.9
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 7.4e-41 170.6 124 66.1
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 7.4e-41 170.6 121 70.2
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 9.7e-41 170.2 124 66.1
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 2.2e-40 169.1 122 68.9
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 2.2e-40 169.1 123 65.0
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.3e-40 167.5 122 70.5
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.3e-40 167.5 122 70.5
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 2.0e-38 162.5 122 70.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 2.6e-38 162.2 121 66.9
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.7e-37 159.5 103 72.8
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 8.5e-37 157.1 121 63.6
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.4e-36 156.4 121 62.8
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.3e-34 149.1 121 64.5
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 3.9e-34 148.3 95 74.7
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 4.4e-33 144.8 116 55.2
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.8e-31 139.4 83 77.1
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 1.7e-29 132.9 82 85.4
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.7e-29 132.9 122 58.2
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 3.2e-28 128.6 68 91.2
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 1.0e-26 123.6 120 53.3
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.0e-26 123.6 90 67.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 4.0e-26 121.7 123 56.1
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 5.2e-26 121.3 100 64.0
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 8.8e-26 120.6 118 53.4
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 2.8e-24 115.5 83 68.7
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.8e-23 112.8 121 54.5
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 3.1e-23 112.1 62 87.1
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.2e-21 105.9 93 57.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 1.1e-20 103.6 60 81.7
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 4.2e-20 101.7 88 59.1
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 8.8e-18 94.0 78 61.5
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 8.3e-16 87.4 104 52.9
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 4.1e-15 85.1 61 65.6
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 4.5e-14 81.6 43 90.7
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 7.5e-09 64.3 107 35.5
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-07 60.1 111 34.2
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.8e-07 59.7 39 66.7
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 2.7e-06 55.8 54 59.3


User provided reference genes

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