Gene: AT5G40550

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40550
  • Transcript Identifier AT5G40550.2
  • Gene Type Coding gene
  • Location Chr5 : 16241285-16243100 : positive

Gene Family Information

  • ID HOM05D001715
  • #Genes/#Species 378/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40550.2
  • symbol SGF29b
  • Alias AtSGF29b
  • full_name SaGa associated Factor 29 b
  • uniprot Q500Z7

Descriptions

  • Description SGF29 tudor-like domain-containing protein
  • Computational description SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1); Has 300 Blast hits to 300 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 107; Plants - 46; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
  • Computational description SGF29 tudor-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT3G27460.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009651
IMP
Gene Ontologyresponse to salt stress1
GO:0043966
IMP
IBA
Gene Ontologyhistone H3 acetylation1 2
GO:0043967
IMP
Gene Ontologyhistone H4 acetylation1
GO:0006325
IEA
GOA Databasechromatin organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035064
IBA
Gene Ontologymethylated histone binding2
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D001715

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000124
IBA
IEA
Gene OntologySAGA complex2
GO:0000124
IEA
InterProSAGA complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005671
IBA
GOA DatabaseAda2/Gcn5/Ada3 transcription activator complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010750 SGF29 tudor-like domain
IPR037802 SAGA-associated factor 29
Mapman id Description
15.3.4.3.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component SGF29