Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.5e-150 535.4 271 100.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 2.6e-147 525.4 273 98.2
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.6e-144 516.2 273 97.1
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 4.3e-142 508.1 270 95.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.4e-137 491.1 272 91.2
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.2e-136 490.0 271 91.9
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 2.1e-136 489.2 270 91.5
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.0e-136 487.6 272 91.2
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.7e-135 486.1 271 90.8
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.7e-135 486.1 271 92.3
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.5e-134 483.0 271 91.5
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 4.3e-134 481.5 271 90.4
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 5.6e-134 481.1 270 90.7
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.6e-134 481.1 270 90.4
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 2.1e-133 479.2 270 90.7
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 6.2e-133 477.6 270 90.0
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 4.4e-131 471.5 284 85.9
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.3e-125 453.4 271 85.6
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.2e-120 436.8 271 80.4
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 1.6e-120 436.4 271 81.2
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 2.1e-120 436.0 271 79.7
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.0e-119 433.7 271 80.1
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.9e-119 431.8 271 79.7
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.9e-119 431.8 271 79.7
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 5.1e-119 431.4 271 78.2
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.1e-118 430.3 271 78.2
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.1e-118 430.3 271 78.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.1e-118 430.3 271 79.7
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.3e-118 428.3 271 78.6
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 2.1e-117 426.0 272 80.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.1e-117 426.0 272 81.6
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.1e-117 426.0 273 78.0
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.1e-116 423.7 271 77.1
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.8e-116 422.9 271 77.5
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.4e-116 422.5 271 79.0
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.1e-116 422.2 271 76.8
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.1e-116 422.2 271 79.3
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 6.9e-116 421.0 272 75.4
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.9e-116 421.0 271 78.6
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 9.0e-116 420.6 270 79.3
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.5e-115 419.9 273 76.6
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.6e-115 419.1 271 77.5
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 3.4e-115 418.7 270 79.3
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 4.5e-115 418.3 269 74.7
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 7.6e-115 417.5 269 74.7
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 7.6e-115 417.5 270 77.0
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 7.6e-115 417.5 272 76.1
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.9e-115 417.2 271 77.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 9.9e-115 417.2 271 77.1
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 9.9e-115 417.2 270 77.0
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.3e-114 416.8 271 76.8
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.3e-114 416.8 271 77.1
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 1.7e-114 416.4 271 74.9
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 3.8e-114 415.2 271 73.1
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.1e-113 413.7 271 76.4
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.4e-113 413.3 271 76.8
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.4e-113 413.3 271 76.4
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.9e-113 412.9 317 70.3
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.9e-113 412.9 271 74.5
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.4e-113 412.5 281 74.4
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 2.4e-113 412.5 270 75.6
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.2e-112 410.2 231 90.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.2e-112 410.2 273 76.2
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.6e-112 409.8 272 75.4
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 1.6e-112 409.8 275 78.5
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 4.6e-112 408.3 272 72.8
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.0e-112 407.9 272 74.3
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.0e-112 407.9 272 74.3
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 7.9e-112 407.5 272 75.4
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-111 406.8 272 74.3
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.8e-111 406.4 275 79.6
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.8e-111 406.4 272 75.4
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 2.3e-111 406.0 272 74.6
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 2.3e-111 406.0 270 73.7
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.3e-111 406.0 297 71.4
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 5.6e-110 401.4 270 74.1
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.3e-109 400.2 284 71.8
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 4.8e-109 398.3 274 73.7
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 6.2e-109 397.9 232 88.4
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 6.2e-109 397.9 273 74.0
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.3e-106 390.2 271 73.4
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 4.9e-106 388.3 283 70.3
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 6.5e-106 387.9 272 72.1
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 6.5e-106 387.9 342 61.1
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.1e-105 387.1 273 71.8
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.2e-105 385.6 272 72.1
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.2e-105 385.2 271 72.0
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 5.5e-105 384.8 272 71.0
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.7e-104 382.5 330 60.9
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.5e-104 382.1 274 71.5
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 7.9e-104 380.9 271 72.0
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.0e-103 380.6 271 70.8
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 3.0e-103 379.0 271 71.6
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 3.0e-103 379.0 271 71.6
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 5.1e-103 378.3 273 70.7
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 5.1e-103 378.3 273 70.7
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.5e-102 375.9 293 64.5
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 3.3e-102 375.6 271 70.5
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 5.7e-102 374.8 263 77.2
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 5.7e-102 374.8 306 64.4
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 5.7e-102 374.8 306 64.4
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 9.7e-102 374.0 296 66.2
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 2.8e-101 372.5 271 70.5
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 3.7e-101 372.1 273 71.8
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 8.2e-101 370.9 271 70.5
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.4e-100 370.2 237 78.5
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.1e-100 368.6 287 67.6
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.2e-99 367.1 273 70.3
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.5e-99 365.2 274 67.9
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 1.0e-98 364.0 257 73.2
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.3e-98 363.6 231 78.8
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.3e-98 363.6 254 70.5
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 3.8e-98 362.1 273 71.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.1e-97 360.5 277 67.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 3.2e-97 359.0 262 70.2
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.7e-96 355.9 232 76.7
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 4.6e-96 355.1 273 67.4
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 6.1e-96 354.8 274 68.6
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.0e-95 352.4 274 69.0
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 5.1e-95 351.7 274 69.0
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 6.7e-95 351.3 273 65.6
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.9e-92 341.3 332 57.2
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 5.5e-89 331.6 230 71.7
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 7.9e-88 327.8 268 64.6
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 3.9e-87 325.5 235 68.5
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 3.3e-86 322.4 279 64.2
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.7e-85 320.1 242 68.6
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.7e-85 320.1 274 61.7
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.5e-81 306.2 285 59.6
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 9.4e-81 304.3 355 51.5
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 3.6e-80 302.4 271 61.6
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 3.6e-80 302.4 232 68.5
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.8e-79 300.1 290 57.6
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 3.8e-74 282.3 234 66.7
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 3.8e-74 282.3 268 57.8
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 5.5e-73 278.5 200 71.5
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.0e-72 274.6 200 71.0
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.0e-71 274.2 173 77.5
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.8e-68 263.5 230 60.0
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.8e-68 263.5 268 54.9
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.7e-67 259.6 181 73.5
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 4.5e-67 258.8 269 52.4
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 5.0e-66 255.4 165 78.8
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.2e-65 252.3 174 73.0
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 7.2e-65 251.5 172 70.9
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 7.2e-65 251.5 261 53.6
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.0e-63 247.7 261 52.5
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.4e-63 247.3 202 65.3
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.8e-63 246.9 276 50.0
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-63 246.5 228 61.0
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.0e-62 243.4 272 51.1
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 3.4e-62 242.7 158 78.5
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 9.5e-57 224.6 148 73.0
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.1e-56 223.4 164 70.7
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.7e-53 213.8 131 80.2
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.4e-52 210.7 169 65.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.5e-51 205.7 257 49.8
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-50 204.1 125 79.2
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.8e-50 202.6 232 51.3
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 7.3e-49 198.4 213 52.1
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.1e-48 196.8 235 49.4
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 3.7e-45 186.0 151 65.6
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 7.8e-43 178.3 202 51.5
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 2.0e-38 163.7 134 66.4
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.4e-36 156.8 138 58.7
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 8.6e-34 148.3 273 37.7
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-32 143.3 180 48.3
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.9e-31 138.3 164 50.0
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.1e-27 127.1 90 70.0
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 3.5e-27 126.3 85 71.8
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.0e-26 123.2 151 50.3
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 3.1e-23 113.2 74 74.3
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.4e-22 109.8 70 72.9
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 5.4e-20 102.4 241 32.0
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 2.3e-18 97.1 74 64.9
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.9e-18 96.3 69 69.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.9e-10 69.7 138 36.2
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.1e-09 68.2 175 32.0
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.3e-09 65.5 42 76.2
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 7.3e-09 65.5 41 75.6
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.1e-07 60.1 34 82.4


User provided reference genes

Program Settings