Gene: AT5G40560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40560
  • Transcript Identifier AT5G40560.1
  • Gene Type Coding gene
  • Location Chr5 : 16243537-16246519 : positive

Gene Family Information

  • ID HOM05D000915
  • #Genes/#Species 656/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40560.1
  • symbol DEG13
  • Alias DegP13,DegP protease 13
  • full_name degradation of periplasmic proteins 13
  • uniprot Q9FM41

Descriptions

  • Description protease Do-like protein
  • Computational description DegP protease 13 (DegP13); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 10 (TAIR:AT5G36950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IBA
IEA
GOA Databaseproteolysis
GO:0006508
ISS
Gene Ontologyproteolysis
GO:0006508
IEA
InterProproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008236
IEA
GOA Databaseserine-type peptidase activity
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0004252
IBA
IEA
GOA Databaseserine-type endopeptidase activity
GO:0004252
IEA
InterProserine-type endopeptidase activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009003 Peptidase S1, PA clan
IPR001478 PDZ domain
IPR036034 PDZ superfamily
IPR001940 Peptidase S1C
IPR041517 Protease Do-like, PDZ domain
Mapman id Description
19.4.2.3 Protein homeostasis.proteolysis.serine-type peptidase activities.S1-class protease (Deg)